YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24345742, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	384 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24345742, gi|....

Description	E-value	Query Range	Subject Range
gi\|67544660, gi\|... - gi\|67544660\|ref\|ZP_00422587.1\| Porin, Gram-negative type [Burkholderia vietnamiensis G4], gi\|6753403...	228.0	[0..29]	[384..105]
gi\|83716254, gi\|... - gi\|83716254\|ref\|YP_438901.1\| outer membrane porin OpcP [Burkholderia thailandensis E264], gi\|8365007...	223.0	[0..32]	[384..162]
gi\|7228492 - gi\|7228492\|gb\|AAF42480.1\|AF226331_1 PorA precursor [Neisseria meningitidis]	216.0	[0..1]	[384..1]
gi\|78063693, gi\|... - gi\|78063693\|ref\|YP_373601.1\| outer membrane protein (porin) [Burkholderia sp. 383], gi\|77971578\|gb\|A...	216.0	[0..1]	[384..1]
gi\|67655588, gi\|... - gi\|67655588\|ref\|ZP_00452974.1\| Porin, Gram-negative type [Burkholderia cenocepacia AU 1054], gi\|6709... gi\|116693341, gi... - gi\|67666805\|ref\|ZP_00464045.1\| Porin, Gram-negative type [Burkholderia cenocepacia HI2424], gi\|67099...	214.0	[0..1]	[384..25]

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Predicted Domain #1

Region A:
Residues: [1-384]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKTCIALML PMLLVAINSQ AIELYNDQKN SLDLSGWLGF AALNDSHDTS VIDDSSRVRF  60
   61 SFERSERNGW TAFATTEWGI NMVSSDDSLV MQGGKLAAEK TEDFLYNRLG YVGMSHDKWG 120
  121 SLSFGKQWGA YYDVAGTTDL PNVFAGYSVG AYAFSDGGLT GTGRADSAFI YRNNFGPVQI 180
  181 ALQYAAKTNG DVTLKNDDGS EMVNSKLNFD SSYGASLTYS LTDKFKLLAG VNRGDFEGHL 240
  241 GNTQVDETNE IVGIGAMYGD YYHYADNREA SGLYVGFNAH KSKNNELVGG DLYDATGAEL 300
  301 MTAYQFDNGF VPMIVLSYLD LDTDANTPIQ GKWTRQFAML GLHYRYSNDT VMFAEMKLNF 360
  361 SNMDDAALEA QEDNGFAVGI NYFF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	42.0
Match:	1phoA
Description:	CRYSTAL STRUCTURES EXPLAIN FUNCTIONAL PROPERTIES OF TWO E. COLI PORINS
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
transporter activity	2.60507547654721	bayes_pls_golite062009
substrate-specific transporter activity	0.86109425700917	bayes_pls_golite062009
transmembrane transporter activity	0.424956094980482	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: