YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24371879, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	359 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24371879, gi|....

Description	E-value	Query Range	Subject Range
gi\|30962024, gi\|... - ref\|XP_421406.1\| PREDICTED: similar to heat shock protein 70 [Gallus gallus], gi\|37590083\|gb\|AAN1828...	427.0	[0..7]	[359..1]
HSP7C_ORYLA - Heat shock cognate 71 kDa protein OS=Oryzias latipes GN=hsc70 PE=2 SV=1	426.0	[0..10]	[359..3]
gi\|27802643 - gi\|27802643\|gb\|AAO21473.1\| hsp70 family member [Locusta migratoria]	426.0	[0..7]	[359..1]
gi\|94387119 - gi\|94387119\|ref\|XP_994676.1\| PREDICTED: similar to heat shock protein 8 [Mus musculus]	426.0	[0..10]	[359..66]
gi\|111306225, gi... - gi\|118404236\|ref\|NP_001072429.1\| heat shock 70kDa protein 1-like [Xenopus (Silurana) tropicalis], gi...	425.0	[0..7]	[359..1]
gi\|31322197 - gi\|31322197\|gb\|AAO41703.1\| heat shock protein 70 [Crassostrea ariakensis]	425.0	[0..7]	[359..1]
gi\|25396540 - gi\|25396540\|dbj\|BAC24791.1\| heat shock protein [Numida meleagris]	424.0	[0..7]	[359..1]
CCDS9766.1_1 - null HSPA2 - heat shock 70kDa protein 2 gi\|60655351, gi\|... - gi\|60655355\|gb\|AAX32241.1\| heat shock 70kDa protein 2 [synthetic construct], gi\|60655353\|gb\|AAX32240...	424.0	[0..7]	[359..1]

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Predicted Domain #1

Region A:
Residues: [1-359]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLSNLWKRQA PQMVGIDIGS HEVKAILLGK TADGYKILSH AAVPVKKGAI NDHDIRDADA  60
   61 VVECLRQIKR ILPKSVKYAA VAVSGSAVMT KVIYMDASLS EEEMEAQIEI EADNLIPYSL 120
  121 DEVSIDFETL NVNSTDPSKV DVLLSACRTD NIDTRVDALD EVELETKVVD VEGYALGRAV 180
  181 ELVLGQLPEG ARQKAVAMVD IGANMTTFCV VESGETTFIR EQAFGGELFT QSILSFYGMS 240
  241 YEQAEKAKIE GDLPRNYMFE VLSPFQTQLL QQIKRTLQIY CTSSGKDKVD YLVLCGGTSK 300
  301 LEGMANLLTN ELGVHTIIAD PFQGCLHADE SVKNILQPSI SKYMVACGLA LRSYGQWRT

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	117.0
Match:	1yuwA
Description:	crystal structure of bovine hsc70(aa1-554)E213A/D214A mutant
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.631054730802339	bayes_pls_golite062009
protein binding	0.445575084737223	bayes_pls_golite062009
catalytic activity	0.124320622497806	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: