YRC Public Data Repository - Protein Structure Prediction

Protein:	HEM6_SHEON
Organism:	Shewanella oneidensis MR-1
Length:	302 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for HEM6_SHEON.

Description	E-value	Query Range	Subject Range
HEM6_CHRVO - Coproporphyrinogen-III oxidase, aerobic OS=Chromobacterium violaceum GN=hemF PE=3 SV=1 HEM6_CHRVO - Oxygen-dependent coproporphyrinogen-III oxidase OS=Chromobacterium violaceum (strain ATCC 12472 / DS...	562.0	[0..1]	[302..1]
HEM6_SACD2 - Oxygen-dependent coproporphyrinogen-III oxidase OS=Saccharophagus degradans (strain 2-40 / ATCC 4396...	560.0	[0..1]	[301..1]
HEM6_SHESA - Oxygen-dependent coproporphyrinogen-III oxidase OS=Shewanella sp. (strain ANA-3) GN=hemF PE=3 SV=1	555.0	[0..1]	[302..1]
HEM6_SHESR - Oxygen-dependent coproporphyrinogen-III oxidase OS=Shewanella sp. (strain MR-7) GN=hemF PE=3 SV=1 HEM6_SHESM - Oxygen-dependent coproporphyrinogen-III oxidase OS=Shewanella sp. (strain MR-4) GN=hemF PE=3 SV=1	554.0	[0..1]	[302..1]
gi\|78366958, gi\|... - gi\|78366958\|ref\|ZP_00837233.1\| Coproporphyrinogen oxidase [Shewanella sp. PV-4], gi\|78360901\|gb\|EAP0...	554.0	[0..4]	[302..3]
gi\|68519312, gi\|... - gi\|68543023\|ref\|ZP_00582741.1\| Coproporphyrinogen oxidase [Shewanella baltica OS155], gi\|68519312\|gb...	553.0	[0..1]	[302..22]
gi\|160873163, gi... - gi\|160873163\|ref\|YP_001552479.1\| coproporphyrinogen III oxidase [Shewanella baltica OS195], gi\|16085...	551.0	[0..1]	[302..22]
gi\|77810258, gi\|... - gi\|77814738\|ref\|ZP_00813992.1\| Coproporphyrinogen oxidase [Shewanella putrefaciens CN-32], gi\|778102... gi\|82741941, gi\|... - gi\|82741941\|ref\|ZP_00904650.1\| Coproporphyrinogen oxidase [Shewanella sp. W3-18-1], gi\|82720726\|gb\|E...	550.0	[0..1]	[302..32]
gi\|75240094 - gi\|75240094\|ref\|ZP_00724053.1\| COG0408: Coproporphyrinogen III oxidase [Escherichia coli F11] gi\|91073348, gi\|... - gi\|91211774\|ref\|YP_541760.1\| coproporphyrinogen III oxidase [Escherichia coli UTI89], gi\|91073348\|gb... gi\|26248812, gi\|... - gi\|26248812\|ref\|NP_754852.1\| coproporphyrinogen III oxidase [Escherichia coli CFT073], gi\|26109218\|g... gi\|226901325, gi... - gi\|237704959\|ref\|ZP_04535440.1\| coproporphyrinogen III oxidase [Escherichia sp. 3_2_53FAA], gi\|22690...	548.0	[0..1]	[302..1]
HEM6_PSEPK - Oxygen-dependent coproporphyrinogen-III oxidase OS=Pseudomonas putida (strain KT2440) GN=hemF PE=3 S...	545.0	[0..7]	[302..6]

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Predicted Domain #1

Region A:
Residues: [1-302]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLPDATVVK AFLLDLQHRI CAGLEQLDGQ ASFAADSWTR AEGGGGTSRV LTQGAVFEQA  60
   61 GVNFSHVTGA AMPASATAHR PELAGRSFEA MGVSLVIHPK NPYIPTTHAN VRFFIAHKDG 120
  121 AEPVWWFGGG FDLTPYYPFE EDVREWHQSA KNLCQPFGDD VYPKYKKWCD EYFFLPHRNE 180
  181 TRGVGGLFFD DLNQAGFDKS FDFMQAVGNG FLTAYAPIVE RRKDTDYGER ERDFQLYRRG 240
  241 RYVEFNLVYD RGTLFGLQTG GRTESILMSM PPLVRWQYAY TPAAGSPEAD LYDNYLKPRD 300
  301 WV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	139.0
Match:	1vjuA
Description:	Hypothetical protein from Leishmania major Lmaj006828
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
coproporphyrinogen oxidase activity	5.81247465629978	bayes_pls_golite062009
oxidoreductase activity, acting on the CH-CH group of donors, oxygen as acceptor	5.1724965213902	bayes_pls_golite062009
oxidoreductase activity, acting on the CH-CH group of donors	3.24343461428814	bayes_pls_golite062009
binding	1.8297496024321	bayes_pls_golite062009
catalytic activity	1.56559069221062	bayes_pls_golite062009
protein binding	0.374996803717649	bayes_pls_golite062009
oxidoreductase activity	0.0360049460478797	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: