Protein: | UGA3_YEAST |
Organism: | Saccharomyces cerevisiae S288c |
Length: | 528 amino acids |
Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for UGA3_YEAST.
Description | E-value | Query Range |
Subject Range |
|
0.0 | [1..528] | [1..528] |
|
0.0 | [9..526] | [13..522] |
|
1.0E-51 | [2..268] | [76..315] |
|
6.0E-35 | [2..182] | [37..214] |
|
7.0E-34 | [2..182] | [37..213] |
|
3.0E-30 | [2..182] | [38..214] |
|
2.0E-28 | [9..179] | [4..209] |
Region A: Residues: [1-58] |
1 11 21 31 41 51 | | | | | | 1 MNYGVEKLKL KYSKHGCITC KIRKKRCSED KPVCRDCRRL SFPCIYISES VDKQSLKK |
Detection Method: | |
Confidence: | 32.201249 |
Match: | 1pyiA_ |
Description: | PPR1 |
Matching Structure (courtesy of the PDB): |
Term | Confidence | Notes |
transcription regulator activity | 4.56444258780502 | bayes_pls_golite062009 |
DNA binding | 4.26146437716972 | bayes_pls_golite062009 |
nucleic acid binding | 4.17369933547911 | bayes_pls_golite062009 |
transcription factor activity | 3.049435548132 | bayes_pls_golite062009 |
sequence-specific DNA binding | 2.98081393153291 | bayes_pls_golite062009 |
RNA polymerase II transcription factor activity | 2.93914501897006 | bayes_pls_golite062009 |
binding | 2.91929847152301 | bayes_pls_golite062009 |
specific RNA polymerase II transcription factor activity | 2.44382866473054 | bayes_pls_golite062009 |
transcription activator activity | 2.24483536326713 | bayes_pls_golite062009 |
Region A: Residues: [59-452] |
1 11 21 31 41 51 | | | | | | 1 IKADIQHQLI SKKRKHAPDS AQKAAVATRT RRVGSDEQDN QVYLSKPLED CISQKLDSMG 60 61 LQLYNYYRSH LANIISIAPM NQNYYLNIFL PMAHENDGIL FAILAWSANH LSISSSNELR 120 121 KDEIFVNLAN KYTYMSLSHL KTNEGSSACA KLGFLYSLAQ ILILCGSEIC QGDVKFWKIL 180 181 LNIGKNLIEN HVGKDVSRIL TTTTEEPSLE ERIIFPNFNS VVKYWLIVNF IYHDILNFNT 240 241 TSFPIEQYEK FFQRDQNSLP SSANFIESID SPIEEIDPLI GINKPILLLL GQVTNLTRFL 300 301 QTMEQEEMLE HGDKILSLQV EIYKLQPSLM ALEHLDDEKK FYYLELFEIM KISTLMFFQL 360 361 TLLKIDKDSL ELQILRNKLD SKLDKVIGTF LEGS |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
Region A: Residues: [453-528] |
1 11 21 31 41 51 | | | | | | 1 LCFPLFIYGV CIQVEDMEKK IDLEAKFDDI LKRYKCYNFQ NARLLIRKIW QNEADGISEH 60 61 DLVHMIDELD YNINFA |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
View | Download | 0.888 | 0.193 | regulation of transcription from RNA polymerase II promoter | a.74.1 | Cyclin-like |
Region A: Residues: [395-528] |
1 11 21 31 41 51 | | | | | | 1 DEKKFYYLEL FEIMKISTLM FFQLTLLKID KDSLELQILR NKLDSKLDKV IGTFLEGSLC 60 61 FPLFIYGVCI QVEDMEKKID LEAKFDDILK RYKCYNFQNA RLLIRKIWQN EADGISEHDL 120 121 VHMIDELDYN INFA |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.