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View Structure Prediction Details

Protein: UBX3_YEAST
Organism: Saccharomyces cerevisiae S288c
Length: 455 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for UBX3_YEAST.

Description E-value Query
Range
Subject
Range
UBX3 - UBX (ubiquitin regulatory X) domain-containing protein that interacts with Cdc48p, green fluorescent...
gi|207346999 - gi|207346999|gb|EDZ73321.1| YDL091Cp-like protein [Saccharomyces cerevisiae AWRI1631]
UBX3_YEAST - UBX domain-containing protein 3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=UBX3 PE=...
gi|151941910 - gi|151941910|gb|EDN60266.1| ubiquitin regulatory X [Saccharomyces cerevisiae YJM789]
0.0 [1..455] [1..455]
gi|7507776 - gi|7507776|pir||T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans
7.0E-69 [124..451] [130..464]
PUX10_ARATH - Plant UBX domain-containing protein 10 OS=Arabidopsis thaliana GN=PUX10 PE=2 SV=1
9.0E-67 [124..451] [144..478]
gi|215678662, gi... - gi|37536146|ref|NP_922375.1| unknown protein [Oryza sativa (japonica cultivar-group)], gi|31433109|g...
9.0E-61 [128..451] [133..463]
UCP10_SCHPO - UBX domain-containing protein 10 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ucp10 PE=...
ucp10 - UBA /UAS domain protein Ucp10
2.0E-58 [141..455] [101..427]
gi|168278371, gi... - gi|168278371|dbj|BAG11065.1| FAS-associated factor 1 [synthetic construct], gi|123999215|gb|ABM87187...
FAF1 - Fas (TNFRSF6) associated factor 1
1.0E-57 [135..452] [325..648]
Faf-PA, FBpp0309814 - The gene Fas-associated factor is referred to in FlyBase by the symbol Dmel\Faf (CG10372, FBgn002560...
gi|220955346, gi... - gi|220955346|gb|ACL90216.1| Faf-PA [synthetic construct], gi|220945460|gb|ACL85273.1| Faf-PA [synthe...
8.0E-57 [129..453] [129..462]

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Predicted Domain #1
Region A:
Residues: [1-124]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDIFRHTFGN NDDSFIRIPG AFREEPPADL NGRTEDQNSN TNEPTQSRDG RLKSILHFLF  60
   61 QAPLIVLYYL LNFIVRSSRL LKPLLRLHGF YQRKHNRLLD HSSQLHRLLE NLENEAQAVT 120
  121 CSEG

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.815 a.7.8 GAT domain

Predicted Domain #2
Region A:
Residues: [125-288]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NGNNDDGSNT DSTSNNESSG VQFSFGSLYN PENGTFSKSI MQNSYTELLD ACSEQVKFGV  60
   61 IYLHDPLLDN HMDYVNKILC SEAFVNMIRK YQVLLWYGDV TTSEGLQVSN ALKIRQYPLL 120
  121 GIISLKAEKK IELIARVEGS ISNYKAQDLE AIFSKNYSRL IQLR

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted functions:

Term Confidence Notes
antioxidant activity 1.01389552298489 bayes_pls_golite062009
peroxidase activity 0.753319016725885 bayes_pls_golite062009
oxidoreductase activity, acting on peroxide as acceptor 0.753319016725885 bayes_pls_golite062009
protein disulfide isomerase activity 0.162300810242639 bayes_pls_golite062009
intramolecular oxidoreductase activity, transposing S-S bonds 0.162300810242639 bayes_pls_golite062009
catalytic activity 0.129588295266429 bayes_pls_golite062009
binding 0.064243103392096 bayes_pls_golite062009
peroxiredoxin activity 0.0343881005856616 bayes_pls_golite062009

Predicted Domain #3
Region A:
Residues: [289-356]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QQRQNIEMQR LIRQQQDSRY QDSLRRDQQR ESERLEQTQR EQMEREHQRI ENQWLLWRKS  60
   61 QLKPEPSS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [357-455]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DKDASKVAIR LENGQRLVRK FDASLPTEEI YAFVELQLHD MLNSENDTLP VYQPANYQHQ  60
   61 YSFKLITPVP RRELDLSTKI SDVSGIYPSG NIVMERLDE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 10.09691
Match: 1h8cA_
Description: Fas-assosiated factor 1, Faf1
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle