YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|25310033
Organism:	Brucella melitensis
Length:	237 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|25310033.

Description	E-value	Query Range	Subject Range
gi\|254701273 - gi\|254701273\|ref\|ZP_05163101.1\| cytochrome C oxidase assembly protein [Brucella suis bv. 5 str. 513] COXZ_BRUMB - Cytochrome c oxidase assembly protein CtaG OS=Brucella melitensis biotype 2 (strain ATCC 23457) GN=c... gi\|254712969 - gi\|254712969\|ref\|ZP_05174780.1\| cytochrome C oxidase assembly protein [Brucella ceti M644/93/1] gi\|254707801 - gi\|254707801\|ref\|ZP_05169629.1\| cytochrome C oxidase assembly protein [Brucella pinnipedialis M163/9... COXZ_BRUME - Cytochrome c oxidase assembly protein ctaG OS=Brucella melitensis GN=ctaG PE=3 SV=2 gi\|254716677 - gi\|254716677\|ref\|ZP_05178488.1\| cytochrome C oxidase assembly protein [Brucella ceti M13/05/1] COXZ_BRUME - Cytochrome c oxidase assembly protein CtaG OS=Brucella melitensis biotype 1 (strain 16M / ATCC 23456... COXZ_BRUSI - Cytochrome c oxidase assembly protein CtaG OS=Brucella suis (strain ATCC 23445 / NCTC 10510) GN=ctaG...	352.0	[0..37]	[237..1]
COXZ_BRUSU - Cytochrome c oxidase assembly protein CtaG OS=Brucella suis biovar 1 (strain 1330) GN=ctaG PE=3 SV=1 gi\|254703820 - gi\|254703820\|ref\|ZP_05165648.1\| cytochrome C oxidase assembly protein [Brucella suis bv. 3 str. 686] COXZ_BRUSU - Cytochrome c oxidase assembly protein ctaG OS=Brucella suis GN=ctaG PE=3 SV=1 COXZ_BRUC2 - Cytochrome c oxidase assembly protein CtaG OS=Brucella canis (strain ATCC 23365 / NCTC 10854) GN=cta...	351.0	[0..37]	[237..1]
gi\|25522563 - gi\|25522563\|pir\|\|AD2671 cytochrome C oxidase assembly protein coxG [imported] - Agrobacterium tumefa... gi\|17934680, gi\|... - gi\|17934680\|ref\|NP_531470.1\| cytochrome C oxidase assembly protein [Agrobacterium tumefaciens str. C...	315.0	[0..6]	[226..7]
gi\|113725765, gi... - gi\|113874397\|ref\|ZP_01414525.1\| Cytochrome oxidase assembly factor-like [Sinorhizobium medicae WSM41...	306.0	[0..17]	[229..46]
COXZ_RHIME - Cytochrome c oxidase assembly protein ctaG OS=Rhizobium meliloti GN=ctaG PE=1 SV=1 COXZ_RHIME - Cytochrome c oxidase assembly protein CtaG OS=Rhizobium meliloti (strain 1021) GN=ctaG PE=1 SV=1	300.0	[0..37]	[229..1]
CG31648-PA - This gene is referred to in FlyBase by the symbol Dmel\CG31648 (CG31648, FBgn0051648). It is a prote... gi\|220959534, gi... - gi\|220959534\|gb\|ACL92310.1\| CG31648-PA [synthetic construct], gi\|220950848\|gb\|ACL87967.1\| CG31648-PA...	295.0	[0..12]	[219..12]
COXZ_RHILO - Cytochrome c oxidase assembly protein CtaG OS=Rhizobium loti (strain MAFF303099) GN=ctaG PE=3 SV=1 COXZ_RHILO - Cytochrome c oxidase assembly protein ctaG OS=Rhizobium loti GN=ctaG PE=3 SV=1	293.0	[0..48]	[235..8]
gi\|7522461, gi\|1... - pir\|\|T37667 probable cytochrome c oxidase assembly protein - fission yeast (Schizosaccharomyces pomb...	292.0	[0..5]	[217..467]
cox1101 - fusion cytochrome c oxidase assembly protein Cox1101, mitochondrial ribosomal protein Rsm22 CO111_SCHPO - Rsm22-cox11 tandem protein 1, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) G...	292.0	[0..5]	[217..525]

Back

Predicted Domain #1

Region A:
Residues: [1-237]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPSRSRFSCF WFTSARWPRW APACSCGRSD NIREERMTDQ GENEKKQRRS NATIAVACLS  60
   61 FFVCMIGAAY ASVPLYRIFC QVTGYGGTTQ RVEQYSDTIL DKTIKVRFDA NIANGLPWDF 120
  121 KPMQREVTVR IGETTMIKYE AHNLFGEETY GRASFNVAPG RAGAYFNKVE CFCFTDNTLK 180
  181 PGEDLELPVV FFVDPEFVND PDLKDVKTIT LSYTFFPIDK PKPVVNAKAV GSTRNGG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	70.69897
Match:	1so9A
Description:	Solution Structure of apoCox11, 30 structures
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	1.26238051646126	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: