YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|25374568
Organism:	Brucella melitensis
Length:	260 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|25374568.

Description	E-value	Query Range	Subject Range
gi\|254704296 - gi\|254704296\|ref\|ZP_05166124.1\| ATP12 ATPase [Brucella suis bv. 3 str. 686] gi\|82699854 - gi\|82699854\|ref\|YP_414428.1\| Beta tubulin [Brucella melitensis biovar Abortus 2308] gi\|254706802 - gi\|254706802\|ref\|ZP_05168630.1\| ATP12 ATPase [Brucella pinnipedialis M163/99/10] gi\|62196058, gi\|... - gi\|62289926\|ref\|YP_221719.1\| hypothetical protein BruAb1_1008 [Brucella abortus bv. 1 str. 9-941], g... gi\|254697368 - gi\|254697368\|ref\|ZP_05159196.1\| ATP12 ATPase [Brucella abortus bv. 2 str. 86/8/59] gi\|82615955 - gi\|82615955\|emb\|CAJ10978.1\| Beta tubulin [Brucella melitensis biovar Abortus 2308] gi\|254701755 - gi\|254701755\|ref\|ZP_05163583.1\| ATP12 ATPase [Brucella suis bv. 5 str. 513] gi\|254716855 - gi\|254716855\|ref\|ZP_05178666.1\| ATP12 ATPase [Brucella ceti M13/05/1] gi\|254730266 - gi\|254730266\|ref\|ZP_05188844.1\| ATP12 ATPase [Brucella abortus bv. 4 str. 292] gi\|254710088 - gi\|254710088\|ref\|ZP_05171899.1\| ATP12 ATPase [Brucella pinnipedialis B2/94] gi\|254714089 - gi\|254714089\|ref\|ZP_05175900.1\| ATP12 ATPase [Brucella ceti M644/93/1] gi\|163673994, gi... - gi\|163843271\|ref\|YP_001627675.1\| ATP12 ATPase [Brucella suis ATCC 23445], gi\|163673994\|gb\|ABY38105.1... gi\|189024168, gi... - gi\|189024168\|ref\|YP_001934936.1\| Beta tubulin [Brucella abortus S19], gi\|189019740\|gb\|ACD72462.1\| Be... gi\|23347822, gi\|... - gi\|23501883\|ref\|NP_698010.1\| hypothetical protein BR1003 [Brucella suis 1330], gi\|23347822\|gb\|AAN299... gi\|237790264, gi... - gi\|237815427\|ref\|ZP_04594425.1\| Hypothetical protein, conserved [Brucella abortus str. 2308 A], gi\|2... gi\|254689233 - gi\|254689233\|ref\|ZP_05152487.1\| ATP12 ATPase [Brucella abortus bv. 6 str. 870] gi\|225627480, gi... - gi\|225627480\|ref\|ZP_03785517.1\| Hypothetical protein, conserved [Brucella ceti str. Cudo], gi\|225617... gi\|225640873, gi... - gi\|225852508\|ref\|YP_002732741.1\| ATP12 ATPase [Brucella melitensis ATCC 23457], gi\|225640873\|gb\|ACO0...	367.0	[0..1]	[260..1]
HGNC:18802\|MIM:6... - synthase mitochondrial F1 complex assembly factor 2 gi\|117645306 - gi\|117645306\|emb\|CAL38119.1\| hypothetical protein [synthetic construct] ATPAF2 - ATP synthase mitochondrial F1 complex assembly factor 2	343.0	[0..2]	[257..13]
gi\|25374572, gi\|... - pir\|\|F97538 hypothetical protein (AB009052) [imported] - Agrobacterium tumefaciens (strain C58, Cere... gi\|15888797, gi\|... - gi\|17935373\|ref\|NP_532163.1\| hypothetical protein Atu1473 [Agrobacterium tumefaciens str. C58], gi\|1...	342.0	[0..1]	[260..1]
gi\|114668878, gi... - gi\|114668880\|ref\|XP_001159122.1\| PREDICTED: ATP synthase mitochondrial F1 complex assembly factor 2 ...	342.0	[0..2]	[257..13]
gi\|109113499 - gi\|109113499\|ref\|XP_001092786.1\| PREDICTED: similar to ATP synthase mitochondrial F1 complex assembl...	339.0	[0..2]	[257..13]
gi\|62656170, gi\|... - gi\|62656170\|ref\|XP_220522.3\| PREDICTED: similar to ATP synthase mitochondrial F1 complex assembly fa...	331.0	[0..2]	[257..22]
gi\|149262138, gi... - gi\|56205548\|emb\|CAI24077.1\| ATP synthase mitochondrial F1 complex assembly factor 2 [Mus musculus], ...	330.0	[0..2]	[257..22]
gi\|150396238, gi... - gi\|150396238\|ref\|YP_001326705.1\| ATP12 ATPase [Sinorhizobium medicae WSM419], gi\|150027753\|gb\|ABR598...	329.0	[0..1]	[260..1]
gi\|15965140 - gi\|15965140\|ref\|NP_385493.1\| hypothetical protein SMc01277 [Sinorhizobium meliloti 1021] gi\|15074320 - gi\|15074320\|emb\|CAC45966.1\| Hypothetical protein [Sinorhizobium meliloti 1021]	328.0	[0..1]	[260..1]

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Predicted Domain #1

Region A:
Residues: [1-260]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRDILSDLEA GKQLSDENPI VRAQKQMQAQ LPKRFYEKAE VAESEGGFAV HLDGRPVKTP  60
   61 ARNLLLLPTR AAAQIVADEF AAQEKLIDPG KMPATRLVNT AIDGIAQDPQ AVFEDILHFA 120
  121 GTDMLCYRAD SPQELVSRQT ENWDPLIDWM ESLGARFALA EGVMHVEQPR EAIAAFSVHM 180
  181 AGFKDPLALA ALHTMTTLMG SAIIALAVAK GEISAEKGWA IAHIDEDWTI EHWGSDAEAI 240
  241 ERRKNREIEM MVAARLLEAI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	96.045757
Match:	2r6iA
Description:	No description for 2r6iA was found.

Predicted functions:

Term	Confidence	Notes
binding	0.0175898537857605	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: