YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|17938906, gi\|...
Organism:	Agrobacterium tumefaciens str. C58
Length:	235 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|17938906, gi|....

Description	E-value	Query Range	Subject Range
gi\|115360342, gi... - gi\|74017926\|ref\|ZP_00688548.1\| NADPH-dependent FMN reductase [Burkholderia ambifaria AMMD], gi\|72609...	224.0	[0..1]	[235..5]
gi\|38259476, gi\|... - gi\|38347999\|ref\|NP_941248.1\| putative reductase [Serratia marcescens], gi\|38259476\|emb\|CAE51704.1\| p... gi\|226426280, gi... - gi\|226810053\|ref\|YP_002791748.1\| ArsH [Enterobacter cloacae], gi\|226807739\|ref\|YP_002791435.1\| ArsH ... gi\|190410322, gi... - gi\|190410322\|ref\|YP_001965825.1\| arsH [Klebsiella pneumoniae], gi\|146151116\|gb\|ABQ02882.1\| arsH [Kle...	221.0	[0..1]	[235..1]
gi\|86358145, gi\|... - gi\|86358145\|ref\|YP_470037.1\| arsenical resistance protein [Rhizobium etli CFN 42], gi\|86282247\|gb\|AB...	220.0	[0..1]	[235..1]
gi\|24983438, gi\|... - gi\|26988655\|ref\|NP_744080.1\| arsenical resistance protein ArsH, putative [Pseudomonas putida KT2440]...	219.0	[0..1]	[235..5]
gi\|48729362, gi\|... - gi\|77458624\|ref\|YP_348129.1\| NADPH-dependent FMN reductase [Pseudomonas fluorescens Pf0-1], gi\|77382...	219.0	[0..1]	[235..1]
gi\|110648649, gi... - gi\|110835538\|ref\|YP_694397.1\| arsenical resistance protein ArsH [Alcanivorax borkumensis SK2], gi\|11...	219.0	[0..1]	[235..35]
gi\|77964234, gi\|... - gi\|78059684\|ref\|YP_366259.1\| NADPH-dependent FMN reductase [Burkholderia sp. 383], gi\|77964234\|gb\|AB...	216.0	[0..1]	[235..10]
ARREH_RHIME - NADPH-dependent FMN reductase ArsH OS=Rhizobium meliloti (strain 1021) GN=arsH PE=1 SV=1 gi\|15074006 - gi\|15074006\|emb\|CAC45653.1\| Conserved hypothetical protein [Sinorhizobium meliloti 1021]	215.0	[0..2]	[235..8]
gi\|90023418, gi\|... - gi\|90023418\|ref\|YP_529245.1\| arsenical resistance protein ArsH, putative [Saccharophagus degradans 2...	214.0	[0..1]	[233..1]

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Predicted Domain #1

Region A:
Residues: [1-235]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFDLPAAYAA HLRQPDQDAL RPSFSTHKPR ILILYGSLRH VSYSRLLAQE AARLLEHFGC  60
   61 EVRIVDPAGL PLPDAGPVSH PKVQELRDLS AWSEGQVWVS PERHGAMTGI MKAQIDWIPL 120
  121 SVGSVRPTQG KTLAVMQVSG GSQSFNAINQ LRLLGRWMRM ITIPNQSSVA KAFQEFDADG 180
  181 RMKPSSYYDR VVDVCEELVK FTLLTRDASS YLTDRYSERK EEAEKLEQRV SLKSI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	45.154902
Match:	2fzvA
Description:	Crystal Structure of an apo form of a Flavin-binding Protein from Shigella flexneri
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.0900331685337271	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: