YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|16804579
Organism:	Listeria monocytogenes EGD-e
Length:	345 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|16804579.

Description	E-value	Query Range	Subject Range
gi\|254932217, gi... - gi\|254932217\|ref\|ZP_05265576.1\| yeast translation initiation protein [Listeria monocytogenes HPB2262... gi\|226225089, gi... - gi\|226225089\|ref\|YP_002759196.1\| yeast translation initiation protein [Listeria monocytogenes Clip81... gi\|254853930 - gi\|254853930\|ref\|ZP_05243278.1\| yeast translation initiation protein [Listeria monocytogenes FSL R2-... gi\|46881985, gi\|... - gi\|46908713\|ref\|YP_015102.1\| Sua5/YciO/YrdC/YwlC family protein [Listeria monocytogenes str. 4b F236... gi\|254825336 - gi\|254825336\|ref\|ZP_05230337.1\| yeast translation initiation protein [Listeria monocytogenes FSL J1-... gi\|47017319, gi\|... - gi\|47094309\|ref\|ZP_00232012.1\| Sua5/YciO/YrdC/YwlC family protein [Listeria monocytogenes str. 4b H7... gi\|254993431 - gi\|254993431\|ref\|ZP_05275621.1\| yeast translation initiation protein [Listeria monocytogenes FSL J2-... gi\|254879133 - gi\|254879133\|ref\|ZP_05251843.1\| yeast translation initiation protein [Listeria monocytogenes FSL J2-... gi\|255519763 - gi\|255519763\|ref\|ZP_05387000.1\| yeast translation initiation protein [Listeria monocytogenes FSL J1-...	400.0	[0..1]	[345..1]
gi\|16415221, gi\|... - pir\|\|AG1767 yeast translation initiation protein homolog lin2685 [imported] - Listeria innocua (stra... gi\|16801746 - gi\|16801746\|ref\|NP_472014.1\| hypothetical protein lin2685 [Listeria innocua Clip11262]	397.0	[0..1]	[345..1]
gi\|133729219, gi... - gi\|254828117\|ref\|ZP_05232804.1\| hypothetical protein LmonocytogeFSL_06625 [Listeria monocytogenes FS... gi\|254913441, gi... - gi\|254913441\|ref\|ZP_05263453.1\| hypothetical protein LmonJ2_11617 [Listeria monocytogenes J2818], gi... gi\|254937822, gi... - gi\|254937822\|ref\|ZP_05269519.1\| hypothetical protein LmonF6_11867 [Listeria monocytogenes F6900], gi... gi\|47096963, gi\|... - gi\|47096963\|ref\|ZP_00234539.1\| Sua5/YciO/YrdC/YwlC family protein [Listeria monocytogenes str. 1/2a ... gi\|224500715 - gi\|224500715\|ref\|ZP_03669064.1\| hypothetical protein LmonF1_14001 [Listeria monocytogenes Finland 19... gi\|254831036, gi... - gi\|254831036\|ref\|ZP_05235691.1\| hypothetical protein Lmon1_06738 [Listeria monocytogenes 10403S], gi... gi\|153184882, gi... - gi\|254900320\|ref\|ZP_05260244.1\| hypothetical protein LmonJ_10917 [Listeria monocytogenes J0161], gi\|...	396.0	[0..1]	[345..1]
YWLC_BACSU - Probable tRNA threonylcarbamoyladenosine biosynthesis protein YwlC OS=Bacillus subtilis GN=ywlC PE=3... gi\|221320895 - gi\|221320895\|ref\|ZP_03602189.1\| hypothetical protein BsubsJ_19840 [Bacillus subtilis subsp. subtilis... gi\|221325179 - gi\|221325179\|ref\|ZP_03606473.1\| hypothetical protein BsubsS_20001 [Bacillus subtilis subsp. subtilis... gi\|221315984 - gi\|221315984\|ref\|ZP_03597789.1\| hypothetical protein BsubsN3_19897 [Bacillus subtilis subsp. subtili... SUA5_BACSU - Threonylcarbamoyl-AMP synthase OS=Bacillus subtilis (strain 168) GN=ywlC PE=1 SV=1	381.0	[0..1]	[344..1]
gi\|20806674 - gi\|20806674\|ref\|NP_621845.1\| putative translation factor (Sua5) [Thermoanaerobacter tengcongensis MB... gi\|20806674, gi\|... - gi\|20806674\|ref\|NP_621845.1\| putative translation factor (Sua5) [Thermoanaerobacter tengcongensis MB...	380.0	[0..1]	[343..1]
gi\|229147866, gi... - gi\|229147866\|ref\|ZP_04276207.1\| hypothetical protein bcere0012_49890 [Bacillus cereus BDRD-ST24], gi... gi\|228652914, gi... - gi\|229130575\|ref\|ZP_04259531.1\| hypothetical protein bcere0015_50080 [Bacillus cereus BDRD-Cer4], gi... gi\|229112739, gi... - gi\|229112739\|ref\|ZP_04242272.1\| hypothetical protein bcere0018_49780 [Bacillus cereus Rock1-15], gi\|... gi\|29898917, gi\|... - gi\|30023356\|ref\|NP_834987.1\| SUA5 protein [Bacillus cereus ATCC 14579], gi\|29898917\|gb\|AAP12188.1\| S...	379.0	[0..1]	[343..1]
gi\|75762684, gi\|... - gi\|75762684\|ref\|ZP_00742523.1\| Sua5/YciO/YrdC/YwlC family protein [Bacillus thuringiensis serovar is... gi\|228855827, gi... - gi\|228903800\|ref\|ZP_04067916.1\| hypothetical protein bthur0014_49550 [Bacillus thuringiensis IBL 422...	379.0	[0..1]	[343..1]
gi\|42784497, gi\|... - gi\|42784497\|ref\|NP_981744.1\| sua5/yciO/yrdC/ywlC family protein [Bacillus cereus ATCC 10987], gi\|427...	377.0	[0..1]	[345..1]
gi\|47778411, gi\|... - gi\|47778411\|ref\|YP_022236.2\| sua5/yciO/yrdC/ywlC family protein [Bacillus anthracis str. 'Ames Ances... gi\|254686252 - gi\|254686252\|ref\|ZP_05150111.1\| sua5/yciO/yrdC/ywlC family protein [Bacillus anthracis str. CNEVA-90... gi\|49182087, gi\|... - gi\|49188160\|ref\|YP_031413.1\| sua5/yciO/yrdC/ywlC family protein [Bacillus anthracis str. Sterne], gi... gi\|254724247 - gi\|254724247\|ref\|ZP_05186031.1\| sua5/yciO/yrdC/ywlC family protein [Bacillus anthracis str. A1055] gi\|65317301, gi\|... - gi\|65317301\|ref\|ZP_00390260.1\| COG0009: Putative translation factor (SUA5) [Bacillus anthracis str. ... gi\|254735253 - gi\|254735253\|ref\|ZP_05192962.1\| sua5/yciO/yrdC/ywlC family protein [Bacillus anthracis str. Western ... gi\|30265348, gi\|... - gi\|30265348\|ref\|NP_847725.1\| sua5/yciO/yrdC/ywlC family protein [Bacillus anthracis str. Ames], gi\|3... gi\|254755794 - gi\|254755794\|ref\|ZP_05207826.1\| sua5/yciO/yrdC/ywlC family protein [Bacillus anthracis str. Vollum] gi\|254762134 - gi\|254762134\|ref\|ZP_05213980.1\| sua5/yciO/yrdC/ywlC family protein [Bacillus anthracis str. Australi... gi\|170125724, gi... - gi\|170709376\|ref\|ZP_02899789.1\| sua5/yciO/yrdC/ywlC family protein [Bacillus anthracis str. A0389], ... gi\|170667878, gi... - gi\|170688185\|ref\|ZP_02879396.1\| sua5/yciO/yrdC/ywlC family protein [Bacillus anthracis str. A0465], ... gi\|206978500, gi... - gi\|206978500\|ref\|ZP_03239359.1\| sua5/yciO/yrdC/ywlC family protein [Bacillus cereus H3081.97], gi\|20... gi\|177651870, gi... - gi\|177651870\|ref\|ZP_02934453.1\| sua5/yciO/yrdC/ywlC family protein [Bacillus anthracis str. A0174], ... gi\|218906503, gi... - gi\|218906503\|ref\|YP_002454337.1\| sua5/yciO/yrdC/ywlC family protein [Bacillus cereus AH820], gi\|2185... gi\|217063465, gi... - gi\|217962814\|ref\|YP_002341392.1\| sua5/yciO/yrdC/ywlC family protein [Bacillus cereus AH187], gi\|2170... gi\|49480413, gi\|... - gi\|49480413\|ref\|YP_039318.1\| sua5/yciO/yrdC/ywlC family protein [Bacillus thuringiensis serovar konk... gi\|51973706, gi\|... - gi\|52140237\|ref\|YP_086594.1\| sua5/yciO/yrdC/ywlC family protein [Bacillus cereus E33L], gi\|51973706\|... gi\|164712919, gi... - gi\|165871252\|ref\|ZP_02215901.1\| sua5/yciO/yrdC/ywlC family protein [Bacillus anthracis str. A0488], ... gi\|227004860, gi... - gi\|227818088\|ref\|YP_002818097.1\| sua5/yciO/yrdC/ywlC family protein [Bacillus anthracis str. CDC 684... gi\|228917934, gi... - gi\|228917934\|ref\|ZP_04081470.1\| hypothetical protein bthur0012_51350 [Bacillus thuringiensis serovar... gi\|228930333, gi... - gi\|228930333\|ref\|ZP_04093337.1\| hypothetical protein bthur0010_50120 [Bacillus thuringiensis serovar... gi\|228810619, gi... - gi\|228949046\|ref\|ZP_04111318.1\| hypothetical protein bthur0007_51670 [Bacillus thuringiensis serovar... gi\|229094437, gi... - gi\|229094437\|ref\|ZP_04225509.1\| hypothetical protein bcere0021_51420 [Bacillus cereus Rock3-42], gi\|... gi\|229124829, gi... - gi\|229124829\|ref\|ZP_04254007.1\| hypothetical protein bcere0016_51090 [Bacillus cereus 95/8201], gi\|2... gi\|229142067, gi... - gi\|229142067\|ref\|ZP_04270592.1\| hypothetical protein bcere0013_51530 [Bacillus cereus BDRD-ST26], gi... gi\|229199451, gi... - gi\|229199451\|ref\|ZP_04326114.1\| hypothetical protein bcere0001_49500 [Bacillus cereus m1293], gi\|228... gi\|229265390, gi... - gi\|229600982\|ref\|YP_002869540.1\| sua5/yciO/yrdC/ywlC family protein [Bacillus anthracis str. A0248],...	377.0	[0..1]	[345..1]
gi\|163943013, gi... - gi\|89209237\|ref\|ZP_01187684.1\| Sua5/YciO/YrdC/YwlC [Bacillus weihenstephanensis KBAB4], gi\|89152833\|...	375.0	[0..1]	[343..1]

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Predicted Domain #1

Region A:
Residues: [1-214]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQTIHWNINK QQSNQAIFQE AAKLLQGGEC VAFPTETVYG LGADATNQAA VQKIYEAKGR  60
   61 PSDNPLIVHI ARREQMDQFV ASYPAKAIQL MEKFWPGPLT VILPLKKDSL ATNVSAGLST 120
  121 VGVRMPEHPV SLALIGTANI PIAAPSANRS GKPSPTTASH VIEDLDGKIA GIIDGGATGV 180
  181 GLESTVIDCS LEIPIILRPG GVTKEQIEQI IGPV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	63.69897
Match:	1k7jA
Description:	Hypothetical protein YciO
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
telomeric DNA binding	2.58217232196133	bayes_pls_golite062009
single-stranded telomeric DNA binding	1.94245361512193	bayes_pls_golite062009
binding	1.44524229223398	bayes_pls_golite062009
nucleic acid binding	1.15094304608167	bayes_pls_golite062009
DNA binding	0.99027678526068	bayes_pls_golite062009
RNA binding	0.63108051002538	bayes_pls_golite062009
catalytic activity	0.343636936190038	bayes_pls_golite062009
protein binding	0.207821310455625	bayes_pls_golite062009
structure-specific DNA binding	0.0989469098854212	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [215-345]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DISTNNTKET EKPKAPGMKY THYAPKAPVY LIEGSTQFWQ SEINKAEAAN KKLGILATKE  60
   61 LINQLNTSGT IETTGSIKAL DEIATSLYKG LRAFDHADVD IIFAEVYPET ELGAAIMNRL 120
  121 EKAAGNRRIT E

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	19.09691
Match:	2yv4A
Description:	No description for 2yv4A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: