YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|16411024, gi\|...
Organism:	Listeria monocytogenes
Length:	162 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|16411024, gi|....

Description	E-value	Query Range	Subject Range
gi\|16414124, gi\|... - pir\|\|AD1637 hypothetical protein homolog lin1637 [imported] - Listeria innocua (strain Clip11262), g... gi\|16800705 - gi\|16800705\|ref\|NP_470973.1\| hypothetical protein lin1637 [Listeria innocua Clip11262]	133.0	[0..1]	[162..1]
gi\|254898238, gi... - gi\|254898238\|ref\|ZP_05258162.1\| hypothetical protein LmonJ_00445 [Listeria monocytogenes J0161], gi\|... gi\|47096808, gi\|... - gi\|47096808\|ref\|ZP_00234390.1\| GAF domain protein [Listeria monocytogenes str. 1/2a F6854], gi\|47014... gi\|254912269, gi... - gi\|254912269\|ref\|ZP_05262281.1\| hypothetical protein LmonJ2_05685 [Listeria monocytogenes J2818], gi... gi\|133733108, gi... - gi\|254936596\|ref\|ZP_05268293.1\| hypothetical protein LmonF6_05675 [Listeria monocytogenes F6900], gi...	133.0	[0..1]	[162..1]
gi\|46907826, gi\|... - gi\|46907826\|ref\|YP_014215.1\| GAF domain-containing protein [Listeria monocytogenes str. 4b F2365], g... gi\|133727116, gi... - gi\|153167182\|ref\|ZP_01927463.1\| hypothetical protein LMHG_01703 [Listeria monocytogenes FSL N1-017],... gi\|47018186, gi\|... - gi\|47093458\|ref\|ZP_00231222.1\| GAF domain protein [Listeria monocytogenes str. 4b H7858], gi\|4701818... gi\|254828170, gi... - gi\|254828170\|ref\|ZP_05232857.1\| hypothetical protein LmonocytogeFSL_06892 [Listeria monocytogenes FS... gi\|133735287, gi... - gi\|254931535\|ref\|ZP_05264894.1\| hypothetical protein LmonH_03867 [Listeria monocytogenes HPB2262], g... gi\|254824346 - gi\|254824346\|ref\|ZP_05229347.1\| hypothetical protein LmonFS_04234 [Listeria monocytogenes FSL J1-194... gi\|225876658, gi... - gi\|226224196\|ref\|YP_002758303.1\| hypothetical protein Lm4b_01606 [Listeria monocytogenes Clip81459],... gi\|254880155 - gi\|254880155\|ref\|ZP_05252865.1\| hypothetical protein LmonFSL_13221 [Listeria monocytogenes FSL J2-07... gi\|254852217 - gi\|254852217\|ref\|ZP_05241565.1\| hypothetical protein LmonoFSL_02549 [Listeria monocytogenes FSL R2-5...	133.0	[0..1]	[162..1]
gi\|89157723, gi\|... - gi\|89204150\|ref\|ZP_01182728.1\| GAF [Bacillus weihenstephanensis KBAB4], gi\|89157723\|gb\|EAR77714.1\| G...	125.0	[0..1]	[157..1]
gi\|195994116, gi... - gi\|196032687\|ref\|ZP_03100100.1\| conserved hypothetical protein [Bacillus cereus W], gi\|195994116\|gb\|... gi\|49332258, gi\|... - gi\|49480702\|ref\|YP_038702.1\| hypothetical protein BT9727_4387 [Bacillus thuringiensis serovar konkuk... gi\|42739766, gi\|... - gi\|42783836\|ref\|NP_981083.1\| hypothetical protein BCE_4790 [Bacillus cereus ATCC 10987], gi\|42739766... gi\|196043922, gi... - gi\|196043922\|ref\|ZP_03111159.1\| conserved hypothetical protein [Bacillus cereus 03BB108], gi\|1960252... gi\|228811371, gi... - gi\|228948384\|ref\|ZP_04110667.1\| hypothetical protein bthur0007_45100 [Bacillus thuringiensis serovar... gi\|118419019, gi... - gi\|118479794\|ref\|YP_896945.1\| GAF domain-containing protein [Bacillus thuringiensis str. Al Hakam], ... gi\|228842340, gi... - gi\|228917299\|ref\|ZP_04080854.1\| hypothetical protein bthur0012_45110 [Bacillus thuringiensis serovar... gi\|228689635, gi... - gi\|229093750\|ref\|ZP_04224849.1\| hypothetical protein bcere0021_44740 [Bacillus cereus Rock3-42], gi\|... gi\|228987904, gi... - gi\|228987904\|ref\|ZP_04148012.1\| hypothetical protein bthur0001_45710 [Bacillus thuringiensis serovar... gi\|229186912, gi... - gi\|229186912\|ref\|ZP_04314067.1\| hypothetical protein bcere0004_44530 [Bacillus cereus BGSC 6E1], gi\|... gi\|47565068, gi\|... - gi\|47565068\|ref\|ZP_00236111.1\| GAF domain-containing proteins [Bacillus cereus G9241], gi\|47557854\|g...	125.0	[0..1]	[157..1]
gi\|23099657, gi\|... - gi\|23099657\|ref\|NP_693123.1\| hypothetical protein OB2202 [Oceanobacillus iheyensis HTE831], gi\|22777...	125.0	[0..1]	[157..1]
gi\|21402701, gi\|... - gi\|65322025\|ref\|ZP_00394984.1\| COG1956: GAF domain-containing protein [Bacillus anthracis str. A2012... gi\|254687466 - gi\|254687466\|ref\|ZP_05151322.1\| hypothetical protein BantC_26970 [Bacillus anthracis str. CNEVA-9066... gi\|229266327, gi... - gi\|229601919\|ref\|YP_002868935.1\| hypothetical protein BAA_4917 [Bacillus anthracis str. A0248], gi\|2... gi\|229124223, gi... - gi\|229124223\|ref\|ZP_04253415.1\| hypothetical protein bcere0016_45080 [Bacillus cereus 95/8201], gi\|2... gi\|228935963, gi... - gi\|228935963\|ref\|ZP_04098773.1\| hypothetical protein bthur0009_44080 [Bacillus thuringiensis serovar... gi\|228929707, gi... - gi\|228929707\|ref\|ZP_04092724.1\| hypothetical protein bthur0010_43910 [Bacillus thuringiensis serovar... gi\|49187546, gi\|... - gi\|49187546\|ref\|YP_030799.1\| hypothetical protein BAS4552 [Bacillus anthracis str. Sterne], gi\|49181... gi\|227817446, gi... - gi\|227817446\|ref\|YP_002817455.1\| hypothetical protein BAMEG_4938 [Bacillus anthracis str. CDC 684], ... gi\|47505349, gi\|... - gi\|47530201\|ref\|YP_021550.1\| hypothetical protein GBAA4905 [Bacillus anthracis str. 'Ames Ancestor']... gi\|30264726, gi\|... - gi\|30264726\|ref\|NP_847103.1\| hypothetical protein BA4905 [Bacillus anthracis str. Ames], gi\|30259401... gi\|170129716, gi... - gi\|170705591\|ref\|ZP_02896055.1\| conserved hypothetical protein [Bacillus anthracis str. A0389], gi\|1... gi\|172083060, gi... - gi\|177651234\|ref\|ZP_02934065.1\| conserved hypothetical protein [Bacillus anthracis str. A0174], gi\|1... gi\|190568272, gi... - gi\|190568272\|ref\|ZP_03021180.1\| conserved hypothetical protein [Bacillus anthracis Tsiankovskii-I], ... gi\|164714430, gi... - gi\|165869601\|ref\|ZP_02214259.1\| conserved hypothetical protein [Bacillus anthracis str. A0488], gi\|1... gi\|167633935, gi... - gi\|167633935\|ref\|ZP_02392258.1\| conserved hypothetical protein [Bacillus anthracis str. A0442], gi\|1... gi\|167513904, gi... - gi\|167638087\|ref\|ZP_02396365.1\| conserved hypothetical protein [Bacillus anthracis str. A0193], gi\|1... gi\|170670387, gi... - gi\|170685923\|ref\|ZP_02877146.1\| conserved hypothetical protein [Bacillus anthracis str. A0465], gi\|1... gi\|254757431 - gi\|254757431\|ref\|ZP_05209458.1\| hypothetical protein BantA9_03911 [Bacillus anthracis str. Australia... gi\|254754599 - gi\|254754599\|ref\|ZP_05206634.1\| hypothetical protein BantV_19122 [Bacillus anthracis str. Vollum] gi\|254741803 - gi\|254741803\|ref\|ZP_05199490.1\| hypothetical protein BantKB_12433 [Bacillus anthracis str. Kruger B] gi\|254736766 - gi\|254736766\|ref\|ZP_05194472.1\| hypothetical protein BantWNA_16496 [Bacillus anthracis str. Western ...	125.0	[0..1]	[157..1]
gi\|89085180, gi\|... - gi\|89100090\|ref\|ZP_01172959.1\| hypothetical protein B14911_23755 [Bacillus sp. NRRL B-14911], gi\|890...	124.0	[0..1]	[157..1]
gi\|51974323, gi\|... - gi\|52140854\|ref\|YP_085975.1\| hypothetical protein BCZK4397 [Bacillus cereus E33L], gi\|51974323\|gb\|AA...	124.0	[0..1]	[157..1]
gi\|68055944, gi\|... - gi\|68055944\|ref\|ZP_00540082.1\| GAF [Exiguobacterium sibiricum 255-15], gi\|68007468\|gb\|EAM86725.1\| GA...	124.0	[0..1]	[157..1]

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Predicted Domain #1

Region A:
Residues: [1-162]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIEIKKMTGT KEENYALALK QVQAMIHGEP NLIANLSNVS SIINQALSDI NWVGFYLLEK  60
   61 ETNQLVLGPF QGLPACIRIP LGKGVCGSAA SDQKTYIVEN VHDFPGHIAC DAASNSEIVL 120
  121 PIVKNNQLLG VLDIDSPLFN RFNEVDQLWL EKIRDAIVQE IN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	25.0
Match:	1vhmA
Description:	Crystal structure of an hypothetical protein
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	1.20778814200312	bayes_pls_golite062009
DNA binding	0.0838150132948872	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: