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View Structure Prediction Details

Protein: CCDS4595.1_1, CC...
Organism: Chlorocebus aethiops
Length: 130 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CCDS4595.1_1, CC....

Description E-value Query
Range
Subject
Range
gi|68432331 - gi|68432331|ref|XP_690287.1| PREDICTED: similar to ReO_6 [Danio rerio]
1.0E-52 [1..127] [288..414]
gi|57110495 - gi|57110495|ref|XP_545430.1| PREDICTED: similar to Histone H2A.l (H2A/l) [Canis familiaris]
4.0E-47 [1..130] [22..151]
gi|76612869 - gi|76612869|ref|XP_871733.1| PREDICTED: similar to histone H2A [Bos taurus]
8.0E-47 [1..130] [61..190]

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Predicted Domain #1
Region A:
Residues: [1-130]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGRGKQGGK ARAKAKTRSS RAGLQFPVGR VHRLLRKGNY SERVGAGAPV YLAAVLEYLT  60
   61 AEILELAGNA ARDNKKTRII PRHLQLAIRN DEELNKLLGR VTIAQGGVLP NIQAVLLPKK 120
  121 TESHHKAKGK 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 46.522879
Match: 2f8nK
Description: No description for 2f8nK was found.

Predicted functions:

Term Confidence Notes
binding 0.581886805340955 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle