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View Structure Prediction Details

Protein: CE37658
Organism: Caenorhabditis elegans
Length: 489 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE37658.

Description E-value Query
Range
Subject
Range
CE36883 - status:Partially_confirmed UniProt:O16365 protein_id:AAB65899.2
339.0 [0..1] [489..1]

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Predicted Domain #1
Region A:
Residues: [1-172]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTKTEATFSL LDEEEERDEV GPSTVLVPGR PSLRSISLSQ APSAPRDLEN GNGQTSCAEL  60
   61 HKLTAGSTTS LSSQSKNAKK VNKFYKKQNE LLENFKNDSE QIEQFNRTRR RTTSKEEDDD 120
  121 ADVIAAIPPP IPEEKAVVAP LVKHIDGTDE PEVVIFDVPR SPRNPRKKPM ER

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [173-489]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TDTEEKSVDE KKDDESNTAA RMANITLAVN FLLMIAKVVA SVLSGSMSII SSMVDSVVDI  60
   61 TSGLVISLSE RMIKKRDPYL YPRGRTRLEP LSLILISVIM GMASIQLIIA SVRGIHDGIQ 120
  121 FHLYGIGEEP KLNVTITSVV IMVSTVLVKL SLYLFCKRYK EPSVNVLAMD HRNDCISNTV 180
  181 ALICAWLGTK YSYYFDPAGA IVVSMYILYT WVQTGREHLA KLSGKTAEPE FINRIIKVCL 240
  241 DHDARISHID TVYVYHFGSK FLVEVHIVLD ENMILKESHD ISETLQSNIE SLPEVERAFV 300
  301 HTDYDYDHHP HDEHKIV

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 59.154902
Match: 2qfiA
Description: No description for 2qfiA was found.

Predicted functions:

Term Confidence Notes
transporter activity 0.0225298510244101 bayes_pls_golite062009
transmembrane transporter activity 0.00888573638791978 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle