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View Structure Prediction Details

Protein: SIPL1_ARATH
Organism: Arabidopsis thaliana
Length: 372 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SIPL1_ARATH.

Description E-value Query
Range
Subject
Range
SPP2B_CHICK - Signal peptide peptidase-like 2B OS=Gallus gallus GN=SPPL2B PE=2 SV=1
373.0 [0..10] [367..166]

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Predicted Domain #1
Region A:
Residues: [1-166]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 METLWTLLYL LEPAPATLIV TAVTVTFASA FRALNYGKEM ERNRDFSEAS ITLDSSQALM  60
   61 IPVMSSCSLL LMFYLFSSVS QLLTAFTAIA SVSSLFYWLS PYAVYMKTQL GLSDPFLSRC 120
  121 CSKSFTRIQG LLLVACAMTV VAWLISGHWV LNNLLGISIC IAFVSH

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [167-220]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VRLPNIKICA MLLVCLFVYD IFWVFFSERF FGANVMVAVA TQQASNPVHT VANS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [221-372]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LNLPGLQLIT KKLELPVKIV FPRNLLGGVV PGVSASDFMM LGLGDMAIPA MLLALVLCFD  60
   61 HRKTRDVVNI FDLKSSKGHK YIWYALPGYA IGLVAALAAG VLTHSPQPAL LYLVPSTLGP 120
  121 VIFMSWRRKD LAELWEGPAL SNPIEKSHEI EI

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


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