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View Structure Prediction Details

Protein: SIPL1_ARATH
Organism: Arabidopsis thaliana
Length: 372 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SIPL1_ARATH.

Description E-value Query
Range
Subject
Range
SPP2B_CHICK - Signal peptide peptidase-like 2B OS=Gallus gallus GN=SPPL2B PE=2 SV=1
373.0 [0..10] [367..166]

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Predicted Domain #1
Region A:
Residues: [1-166]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 METLWTLLYL LEPAPATLIV TAVTVTFASA FRALNYGKEM ERNRDFSEAS ITLDSSQALM  60
   61 IPVMSSCSLL LMFYLFSSVS QLLTAFTAIA SVSSLFYWLS PYAVYMKTQL GLSDPFLSRC 120
  121 CSKSFTRIQG LLLVACAMTV VAWLISGHWV LNNLLGISIC IAFVSH

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [167-220]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VRLPNIKICA MLLVCLFVYD IFWVFFSERF FGANVMVAVA TQQASNPVHT VANS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [221-372]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LNLPGLQLIT KKLELPVKIV FPRNLLGGVV PGVSASDFMM LGLGDMAIPA MLLALVLCFD  60
   61 HRKTRDVVNI FDLKSSKGHK YIWYALPGYA IGLVAALAAG VLTHSPQPAL LYLVPSTLGP 120
  121 VIFMSWRRKD LAELWEGPAL SNPIEKSHEI EI

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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