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View Structure Prediction Details

Protein: OST48_ARATH
Organism: Arabidopsis thaliana
Length: 437 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for OST48_ARATH.

Description E-value Query
Range
Subject
Range
gi|50777724 - gi|50777724|ref|XP_423294.1| PREDICTED: similar to dolichyl-diphosphooligosaccharide-protein glycotr...
659.0 [0..31] [437..652]

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Predicted Domain #1
Region A:
Residues: [1-307]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVNLSRSVAL ISVFLLPLLS FSFSVDNPTD RRVLVLLDDL SLKSSHSIFF NTLKSRGFDL  60
   61 DFKLAEDSKL ALQRYGQYLY DGLIIFAPST ERFGGSLDSK SIADFVDSGR DLILSADTAA 120
  121 SDLIRGIATE CGVDFDEDSS AMVIDHTSFS VSDVDGDHTL IAADDLVKSD VILGKTKIEA 180
  181 PVLFRGVAHS LNPTNNLVLK VLSASPSAYS ANPSSKLSSP PQLTGSSISL VSVMQARNNA 240
  241 RVVISGSVQL FSDRLIRSGV QKAGSPNQYE KSGNEQFVTE LSKWVFHERG HLKAGNLVHH 300
  301 RVGETDE

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.3
Match: 2gk3A
Description: No description for 2gk3A was found.

Predicted functions:

Term Confidence Notes
catalytic activity 1.21522719658673 bayes_pls_golite062009
binding 1.10799322720495 bayes_pls_golite062009
nucleic acid binding 1.00678459791194 bayes_pls_golite062009
ligase activity 0.952686615697528 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [308-437]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PAIYRIKDDL EFSVEIYEWS GKSWEPYVAN DVQVQFYMMS PYVLKTLSTD KKGLFHTSFK  60
   61 VPDVYGVFQF KVEYEKLGYT TLSLSKQIPV RPYRHNEYER FIPTAYPYYG ACFTTMAGFF 120
  121 VFSFVYLYHK 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle