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View Structure Prediction Details

Protein: ALFL7_ARATH
Organism: Arabidopsis thaliana
Length: 252 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ALFL7_ARATH.

Description E-value Query
Range
Subject
Range
gi|25346630, gi|... - gi|7262694|gb|AAF43952.1|AC012188_29 Contains similarity to an Alfalfa nucleic acid binding protein ...
255.0 [0..1] [252..1]

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Predicted Domain #1
Region A:
Residues: [1-168]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEGIQHPIPR TVEEVFSDFR GRRAGLIKAL STDVQKFYHQ CDPEKENLCL YGLPNETWEV  60
   61 NLPVEEVPPE LPEPALGINF ARDGMQEKDW ISLVAVHSDS WLISVAFYFG ARFGFGKNER 120
  121 KRLFQMINDL PTIFEVVTGN AKQSKDQSAN HNSSRSKSSG GKPRHSES

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [169-252]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HTKASKMSPP PRKEDESGDE DEDDEQGAVC GACGDNYGGD EFWICCDACE KWFHGKCVKI  60
   61 TPAKAEHIKH YKCPSCTTSK KMKA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 10.221849
Match: 1we9A
Description: Solution structure of PHD domain in nucleic acid binding protein-like NP_197993
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 0.24093737575291 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
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