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View Structure Prediction Details

Protein: PUP13_ARATH
Organism: Arabidopsis thaliana
Length: 361 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PUP13_ARATH.

Description E-value Query
Range
Subject
Range
gi|109123815 - gi|109123815|ref|XP_001113968.1| PREDICTED: similar to solute carrier family 35, member E1 [Macaca m...
150.0 [0..42] [354..321]

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Predicted Domain #1
Region A:
Residues: [1-98]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDEEEAMLLL KEEDEGTRRT SVPTQLMKLK RTHWWILVFI SIFFLISAQA IAVLLGRFYY  60
   61 NEGGNSKWIS TLVQTCGFPI LYLPLCFLPA SHSSSSSC

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [99-222]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SFKTLVWIYL SLGFAIGLDN LLYSFGLLYL SASTYSILCS SQLAFNGVFS YYINSQKITC  60
   61 LILFSVLFLS VSAVLVSLDD DSNSPSGDSK WSYLIGCLCT VFASLIYSLQ LSLMQFSFEN 120
  121 VLKS

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 2.13
Match: 2i68A
Description: No description for 2i68A was found.

Predicted Domain #3
Region A:
Residues: [223-361]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ETFSMVLEMQ IYTSLVASCV AVIGLFASGE WMLLSVEMEE FHEGQVIYVL TLVGTAVSWQ  60
   61 LGSVGAVALI FLVSSLFSNL IGTLSLIVTP LAAIAVFHDK LTEVKMVAML IAFMGFGFYI 120
  121 YQNYLDDLKV QRAREAQAE

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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Created and Maintained by: Michael Riffle