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View Structure Prediction Details

Protein: gi|21554207, gi|...
Organism: Arabidopsis thaliana
Length: 178 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|21554207, gi|....

Description E-value Query
Range
Subject
Range
gi|9755658, gi|1... - gi|9755658|emb|CAC01810.1| putative protein [Arabidopsis thaliana], pir||T51436 hypothetical protein...
328.0 [0..1] [178..1]
gi|113578789, gi... - gi|115463277|ref|NP_001055238.1| Os05g0337400 [Oryza sativa (japonica cultivar-group)], gi|113578789...
115.0 [0..86] [175..56]

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Predicted Domain #1
Region A:
Residues: [1-78]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASIAASSTF HSFCRTKSPN LSSTHLLPLS KNLNFRTRAI GNSRNCSFAG FIKQNRLGLR  60
   61 KLSSIGEGGE GVAVAEEQ

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [79-178]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PQETVSVPVS PSDMLTMFFQ ADGTLNEAAI PNVTRALQDI DGVSNLKVQV SEGVAVVELL  60
   61 KQTTVQATGV ASNLVETIQG AGFKLQTLNL SFEDDDEVLV 

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 0.989
Match: 2g9oA
Description: No description for 2g9oA was found.

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Created and Maintained by: Michael Riffle