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View Structure Prediction Details

Protein: gi|21554207, gi|...
Organism: Arabidopsis thaliana
Length: 178 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|21554207, gi|....

Description E-value Query
Range
Subject
Range
gi|9755658, gi|1... - gi|9755658|emb|CAC01810.1| putative protein [Arabidopsis thaliana], pir||T51436 hypothetical protein...
328.0 [0..1] [178..1]
gi|113578789, gi... - gi|115463277|ref|NP_001055238.1| Os05g0337400 [Oryza sativa (japonica cultivar-group)], gi|113578789...
115.0 [0..86] [175..56]

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Predicted Domain #1
Region A:
Residues: [1-78]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASIAASSTF HSFCRTKSPN LSSTHLLPLS KNLNFRTRAI GNSRNCSFAG FIKQNRLGLR  60
   61 KLSSIGEGGE GVAVAEEQ

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.741 a.248.1 Description not found.
View Download 0.738 a.4.1 Homeodomain-like
View Download 0.732 a.4.1 Homeodomain-like
View Download 0.728 a.77.1 DEATH domain
View Download 0.721 a.4.1 Homeodomain-like
View Download 0.669 a.4.1 Homeodomain-like
View Download 0.660 a.4.1 Homeodomain-like
View Download 0.595 d.205.1 GTP cyclohydrolase I feedback regulatory protein, GFRP
View Download 0.580 a.42.1 MDM2

Predicted Domain #2
Region A:
Residues: [79-178]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PQETVSVPVS PSDMLTMFFQ ADGTLNEAAI PNVTRALQDI DGVSNLKVQV SEGVAVVELL  60
   61 KQTTVQATGV ASNLVETIQG AGFKLQTLNL SFEDDDEVLV 

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 0.989
Match: 2g9oA
Description: No description for 2g9oA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle