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View Structure Prediction Details

Protein: UGE3_ARATH
Organism: Arabidopsis thaliana
Length: 351 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for UGE3_ARATH.

Description E-value Query
Range
Subject
Range
gi|221325375 - gi|221325375|ref|ZP_03606669.1| UDP-glucose 4-epimerase [Bacillus subtilis subsp. subtilis str. SMY]
gi|221321091 - gi|221321091|ref|ZP_03602385.1| UDP-glucose 4-epimerase [Bacillus subtilis subsp. subtilis str. JH64...
gi|221316179 - gi|221316179|ref|ZP_03597984.1| UDP-glucose 4-epimerase [Bacillus subtilis subsp. subtilis str. NCIB...
GALE_BACSU - UDP-glucose 4-epimerase OS=Bacillus subtilis (strain 168) GN=galE PE=3 SV=1
GALE_BACSU - UDP-glucose 4-epimerase OS=Bacillus subtilis GN=galE PE=3 SV=1
371.0 [0..9] [349..3]

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Predicted Domain #1
Region A:
Residues: [1-351]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSSVEQNIL VTGGAGFIGT HTVVQLLNQG FKVTIIDNLD NSVVEAVHRV RELVGPDLST  60
   61 KLEFNLGDLR NKGDIEKLFS NQRFDAVIHF AGLKAVGESV GNPRRYFDNN LVGTINLYET 120
  121 MAKYNCKMMV FSSSATVYGQ PEIVPCVEDF ELQAMNPYGR TKLFLEEIAR DIHAAEPEWK 180
  181 IILLRYFNPV GAHESGRIGE DPKGIPNNLM PYIQQVAVGR LPELNVFGHD YPTMDGSAVR 240
  241 DYIHVMDLAD GHVAALNKLF SDSKIGCTAY NLGTGQGTSV LEMVSSFEKA SGKKIPIKLC 300
  301 PRRAGDATAV YASTQKAEKE LGWKAKYGVD EMCRDQWNWA NKNPWGFQKK P

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 97.0
Match: 1lrjA
Description: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
UDP-glucose 4-epimerase activity 2.13934644118967 bayes_pls_golite062009
catalytic activity 1.79741889688267 bayes_pls_golite062009
oxidoreductase activity, acting on CH-OH group of donors 1.03956654822048 bayes_pls_golite062009
nucleic acid binding 0.868888700854563 bayes_pls_golite062009
oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor 0.82673050487418 bayes_pls_golite062009
DNA binding 0.790382977752475 bayes_pls_golite062009
binding 0.784517759335365 bayes_pls_golite062009
alcohol dehydrogenase (NAD) activity 0.65743456407889 bayes_pls_golite062009
transcription regulator activity 0.613310508772122 bayes_pls_golite062009
retinol dehydrogenase activity 0.48941662111046 bayes_pls_golite062009
transcription factor activity 0.11102650759187 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle