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View Structure Prediction Details

Protein: PAO4_ARATH
Organism: Arabidopsis thaliana
Length: 497 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PAO4_ARATH.

Description E-value Query
Range
Subject
Range
gi|13877615 - gi|13877615|gb|AAK43885.1|AF370508_1 putative protein kinase gb|AAD22129 [Arabidopsis thaliana]
314.0 [0..1] [497..1]

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Predicted Domain #1
Region A:
Residues: [1-497]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDKKKNSFPD NLPEGTISEL MQKQNNVQPS VIVIGSGISG LAAARNLSEA SFKVTVLESR  60
   61 DRIGGRIHTD YSFGCPVDMG ASWLHGVSDE NPLAPIIRRL GLTLYRTSGD DSILYDHDLE 120
  121 SYGLFDMHGN KIPPQLVTKV GDAFKRILEE TEKIRDETAN DMSVLQGISI VLDRNPELRQ 180
  181 EGMAYEVLQW YLCRMEAWFA VDANLISLKC WDQDECLSGG HGLMVQGYEP VIRTIAKDLD 240
  241 IRLNHRVTKV VRTSNNKVIV AVEGGTNFVA DAVIITVPIG VLKANLIQFE PELPQWKTSA 300
  301 ISGLGVGNEN KIALRFDRAF WPNVEFLGMV APTSYACGYF LNLHKATGHP VLVYMAAGNL 360
  361 AQDLEKLSDE ATANFVMLQL KKMFPDAPDP AQYLVTRWGT DPNTLGCYAY DVVGMPEDLY 420
  421 PRLGEPVDNI FFGGEAVNVE HQGSAHGAFL AGVSASQNCQ RYIFERLGAW EKLKLVSLMG 480
  481 NSDILETATV PLQISRM

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 43.39794
Match: 1b37A
Description: Polyamine oxidase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
oxidoreductase activity, acting on NADH or NADPH 2.95445632673053 bayes_pls_golite062009
oxidoreductase activity 1.74912150465836 bayes_pls_golite062009
catalytic activity 1.56773888754354 bayes_pls_golite062009
oxidoreductase activity, acting on sulfur group of donors, NAD or NADP as acceptor 1.45104542724719 bayes_pls_golite062009
oxidoreductase activity, acting on sulfur group of donors 0.898926830096765 bayes_pls_golite062009
binding 0.439539948156364 bayes_pls_golite062009
dihydrolipoyl dehydrogenase activity 0.130601418359425 bayes_pls_golite062009
antioxidant activity 0.102762075073416 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle