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View Structure Prediction Details

Protein: BCA4_ARATH
Organism: Arabidopsis thaliana
Length: 280 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for BCA4_ARATH.

Description E-value Query
Range
Subject
Range
gi|15810273, gi|... - gi|6016709|gb|AAF01535.1|AC009325_5 carbonic anhydrase, chloroplast precursor [Arabidopsis thaliana]...
315.0 [0..3] [275..61]

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Predicted Domain #1
Region A:
Residues: [1-280]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPAFGKCFM FCCAKTSPEK DEMATESYEA AIKGLNDLLS TKADLGNVAA AKIKALTAEL  60
   61 KELDSSNSDA IERIKTGFTQ FKTEKYLKNS TLFNHLAKTQ TPKFLVFACS DSRVCPSHIL 120
  121 NFQPGEAFVV RNIANMVPPF DQKRHSGVGA AVEYAVVHLK VENILVIGHS CCGGIKGLMS 180
  181 IEDDAAPTQS DFIENWVKIG ASARNKIKEE HKDLSYDDQC NKCEKEAVNV SLGNLLSYPF 240
  241 VRAEVVKNTL AIRGGHYNFV KGTFDLWELD FKTTPAFAFS 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 67.09691
Match: 1ekjA
Description: beta-carbonic anhydrase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
carbonate dehydratase activity 2.96380803089124 bayes_pls_golite062009
catalytic activity 1.85658156053797 bayes_pls_golite062009
carbon-oxygen lyase activity 1.691366175135 bayes_pls_golite062009
hydro-lyase activity 1.65497918079842 bayes_pls_golite062009
lyase activity 1.62374861994341 bayes_pls_golite062009
binding 1.32962036184517 bayes_pls_golite062009
protein binding 0.132818074687599 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle