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View Structure Prediction Details

Protein: gi|20465745, gi|...
Organism: Arabidopsis thaliana
Length: 103 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|20465745, gi|....

Description E-value Query
Range
Subject
Range
gi|76642713 - gi|76642713|ref|XP_593596.2| PREDICTED: similar to dynein light chain-2 [Bos taurus]
174.0 [0..1] [90..152]

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Predicted Domain #1
Region A:
Residues: [1-103]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLEGKAVMGD TDMKQTMKED ALSLASKALD CFDVTEPTQI ARFIKKEFDR SYGSGWQCIV  60
   61 GTHFGSFVTH CSGCFIHFSV GSLTILLFKG SVGEPAPPDR CSS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 39.522879
Match: 1re6A
Description: Localisation of Dynein Light Chains 1 and 2 and their Pro-apoptotic Ligands
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
microtubule motor activity 9.69298846835381 bayes_pls_golite062009
motor activity 5.85494716006373 bayes_pls_golite062009
dynein intermediate chain binding 4.30226487277718 bayes_pls_golite062009
nitric-oxide synthase regulator activity 3.06572632418145 bayes_pls_golite062009
dynein binding 2.90318309608701 bayes_pls_golite062009
cytoskeletal protein binding 2.8232927372914 bayes_pls_golite062009
binding 2.04793419379986 bayes_pls_golite062009
protein binding 1.75479345161448 bayes_pls_golite062009
nucleoside-triphosphatase activity 1.47503021587966 bayes_pls_golite062009
pyrophosphatase activity 1.40860884968216 bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides 1.39154744890125 bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides 1.38919307572739 bayes_pls_golite062009
ATPase activity, coupled 1.20571334292956 bayes_pls_golite062009
ATPase activity 0.96367371812709 bayes_pls_golite062009
catalytic activity 0.448769452796145 bayes_pls_golite062009
hydrolase activity 0.442050017414837 bayes_pls_golite062009
protein dimerization activity 0.257276734446829 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
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