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View Structure Prediction Details

Protein: CHLD_ARATH
Organism: Arabidopsis thaliana
Length: 760 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CHLD_ARATH.

Description E-value Query
Range
Subject
Range
CHLD_ARATH - Magnesium-chelatase subunit chlD, chloroplast precursor (EC 6.6.1.1) (Mg-protoporphyrin IX chelatase...
442.0 [0..1] [760..1]

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Predicted Domain #1
Region A:
Residues: [1-73]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAMTPVASSS PVSTCRLFRC NLLPDLLPKP LFLSLPKRNR IASCRFTVRA SANATVESPN  60
   61 GVPASTSDTD TET

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 8.0
Match: 1ksfX
Description: N-terminal, ClpS-binding domain of ClpA, an Hsp100 chaperone; ClpA, an Hsp100 chaperone, AAA+ modules
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [74-399]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DTTSYGRQFF PLAAVVGQEG IKTALLLGAV DREIGGIAIS GRRGTAKTVM ARGLHEILPP  60
   61 IEVVVGSISN ADPACPDEWE DDLDERIEYN ADNTIKTEIV KSPFIQIPLG VTEDRLIGSV 120
  121 DVEESVKRGT TVFQPGLLAE AHRGVLYVDE INLLDEGISN LLLNVLTDGV NIVEREGISF 180
  181 RHPCKPLLIA TYNPEEGAVR EHLLDRVAIN LSADLPMSFE DRVAAVGIAT QFQERCNEVF 240
  241 RMVNEETETA KTQIILAREY LKDVKISREQ LKYLVLEAVR GGVQGHRAEL YAARVAKCLA 300
  301 AIEGREKVTI DDLRKAVELV ILPRSS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 51.69897
Match: 1g8pA
Description: ATPase subunit of magnesium chelatase, BchI
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 0.470983068319171 bayes_pls_golite062009
hydrolase activity 0.0582794297634999 bayes_pls_golite062009

Predicted Domain #3
Region A:
Residues: [400-760]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LDETPPEQQN QPPPPPPPPQ NSESGEEENE EEQEEEEEDE SNEENENEQQ QDQIPEEFIF  60
   61 DAEGGLVDEK LLFFAQQAQK RRGKAGRAKN VIFSEDRGRY IKPMLPKGPV KRLAVDATLR 120
  121 AAAPYQKLRR EKDISGTRKV FVEKTDMRAK RMARKAGALV IFVVDASGSM ALNRMQNAKG 180
  181 AALKLLAESY TSRDQVSIIP FRGDAAEVLL PPSRSIAMAR NRLERLPCGG GSPLAHGLTT 240
  241 AVRVGLNAEK SGDVGRIMIV AITDGRANIT LKRSTDPESI APDAPRPTSK ELKDEILEVA 300
  301 GKIYKAGMSL LVIDTENKFV STGFAKEIAR VAQGKYYYLP NASDAVISAT TRDALSDLKN 360
  361 S

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 14.0
Match: 2ok5A
Description: No description for 2ok5A was found.

Predicted functions:

Term Confidence Notes
binding 0.286076792172079 bayes_pls_golite062009
protein binding 0.14494900666454 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
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