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View Structure Prediction Details

Protein: gi|30696806, gi|...
Organism: Arabidopsis thaliana
Length: 286 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30696806, gi|....

Description E-value Query
Range
Subject
Range
gi|25315958, gi|... - pir||F96804 hypothetical protein T5M16.11 [imported] - Arabidopsis thaliana, gi|15223976|ref|NP_1778...
319.0 [0..1] [282..1]

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Predicted Domain #1
Region A:
Residues: [1-286]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MENHLQHSLT IIPKPDLIKE EQRYHEDTVS LQAERILHAM TFPMVLKTAL ELGVIDMITS  60
   61 VDDGVWLSPS EIALGLPTKP TNPEAPVLLD RMLVLLASHS ILKYRTVETG DNIGSRKTER 120
  121 VYAAEPVCTF FLNRGDGLGS LATLFMVLQG EVCMKPWEHL KDMILEGKDA FTSAHGMRFF 180
  181 ELIGSNEQFA EMFNRAMSEA STLIMKKVLE VYKGFEDVNT LVDVGGGIGT IIGQVTSKYP 240
  241 HIKGINFDLA SVLAHAPFNK GVEHVSGDMF KEIPKGDAIF MKVSRK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 81.39794
Match: 1kywA
Description: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 0.835523092977445 bayes_pls_golite062009
transferase activity, transferring one-carbon groups 0.54403439349476 bayes_pls_golite062009
methyltransferase activity 0.54389223881989 bayes_pls_golite062009
transcription regulator activity 0.4843036104266 bayes_pls_golite062009
nucleic acid binding 0.37117756729668 bayes_pls_golite062009
DNA binding 0.3118855114645 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle