YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|229517925, gi...
Organism:	Vibrio cholerae RC9
Length:	193 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|229517925, gi....

Description	E-value	Query Range	Subject Range
gi\|54307981, gi\|... - gi\|54307981\|ref\|YP_129001.1\| putative cytosine/adenosine deaminase [Photobacterium profundum SS9], g...	199.0	[0..19]	[188..1]
gi\|116184449 - gi\|116184449\|ref\|ZP_01474386.1\| hypothetical protein VEx2w_02003038 [Vibrio sp. Ex25]	198.0	[0..17]	[189..20]
gi\|90438699, gi\|... - gi\|90579814\|ref\|ZP_01235622.1\| Putative cytosine/adenosine deaminase [Vibrio angustum S14], gi\|90438...	196.0	[0..19]	[189..1]
gi\|37679027, gi\|... - gi\|37679027\|ref\|NP_933636.1\| cytosine/adenosine deaminase [Vibrio vulnificus YJ016], gi\|37197769\|dbj...	196.0	[0..20]	[189..4]
gi\|86145643, gi\|... - gi\|86145643\|ref\|ZP_01063973.1\| Cytosine/adenosine deaminase [Vibrio sp. MED222], gi\|85836614\|gb\|EAQ5...	195.0	[0..24]	[183..24]
gi\|77958578 - gi\|77958578\|ref\|ZP_00822609.1\| COG0590: Cytosine/adenosine deaminases [Yersinia bercovieri ATCC 4397...	195.0	[0..28]	[188..8]
gi\|77809323, gi\|... - gi\|77815675\|ref\|ZP_00814899.1\| Cytidine/deoxycytidylate deaminase, zinc-binding region [Shewanella p...	195.0	[0..21]	[185..2]
gi\|228657922, gi... - gi\|229125538\|ref\|ZP_04254572.1\| hypothetical protein bcere0015_100 [Bacillus cereus BDRD-Cer4], gi\|2... gi\|30018294, gi\|... - gi\|30018294\|ref\|NP_829925.1\| cytosine deaminase [Bacillus cereus ATCC 14579], gi\|29893834\|gb\|AAP0712...	194.0	[0..23]	[180..1]
gi\|90328101, gi\|... - gi\|90410888\|ref\|ZP_01218902.1\| Putative cytosine/adenosine deaminase [Photobacterium profundum 3TCK]...	194.0	[0..15]	[188..1]
gi\|27363814, gi\|... - gi\|27363814\|ref\|NP_759342.1\| cytosine/adenosine deaminase [Vibrio vulnificus CMCP6], gi\|27359931\|gb\|...	194.0	[0..20]	[189..4]

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Predicted Domain #1

Region A:
Residues: [1-193]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAISARITV FKNPWSVILS ASLFSAQDEQ FMRRAIVLAA QAEAQGEVPV GAVLVRDGEI  60
   61 IAEGWNGSIT NHDATAHAEI EVIRKAGKAL SNYRLLDTTL YVTLEPCPMC AGALLHSRVK 120
  121 RIVYGAPDLK AGAAGTVMDL FSSQAAYHYA TVEKGLLEEE CRAQLQAFFQ RRRKEIKAKR 180
  181 DAERKNAERK NER

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	48.69897
Match:	1z3aA
Description:	Crystal structure of tRNA adenosine deaminase TadA from Escherichia coli
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	2.07800438828306	bayes_pls_golite062009
methyltransferase activity	1.73753215913649	bayes_pls_golite062009
transferase activity, transferring one-carbon groups	1.66914541186463	bayes_pls_golite062009
hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines	0.516651342237498	bayes_pls_golite062009
hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	0.385948807040181	bayes_pls_golite062009
hydrolase activity	0.34203636465094	bayes_pls_golite062009
transferase activity	0.268221683084535	bayes_pls_golite062009
deaminase activity	0.100786900220128	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: