YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|238911285
Organism:	Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191
Length:	185 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|238911285.

Description	E-value	Query Range	Subject Range
RRF_ERWCT - Ribosome-recycling factor OS=Erwinia carotovora subsp. atroseptica GN=frr PE=3 SV=1 RRF_PECAS - Ribosome-recycling factor OS=Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672) GN=frr PE...	7.0E-71	[1..185]	[1..185]
gi\|24050375, gi\|... - gi\|24111607\|ref\|NP_706117.1\| ribosome recycling factor [Shigella flexneri 2a str. 301], gi\|24050375\|... gi\|195938146 - gi\|195938146\|ref\|ZP_03083528.1\| ribosome recycling factor [Escherichia coli O157:H7 str. EC4024] RRF_ECOL6 - Ribosome-recycling factor OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=frr PE=3... gi\|208809164, gi... - gi\|208809164\|ref\|ZP_03251501.1\| ribosome releasing factor [Escherichia coli O157:H7 str. EC4206], gi... gi\|30061729, gi\|... - gi\|30061729\|ref\|NP_835900.1\| ribosome recycling factor [Shigella flexneri 2a str. 2457T], gi\|3003997... gi\|208812775, gi... - gi\|208812775\|ref\|ZP_03254104.1\| ribosome releasing factor [Escherichia coli O157:H7 str. EC4045], gi... RRF_ECO57 - Ribosome-recycling factor OS=Escherichia coli O157:H7 GN=frr PE=3 SV=1 gi\|208739249, gi... - gi\|208819126\|ref\|ZP_03259446.1\| ribosome releasing factor [Escherichia coli O157:H7 str. EC4042], gi... EG10335 - ribosome recycling factor / Ribosome recycling factor (RRF); dissociates ribosomes from mRNA after t... RRF_ECO5E - Ribosome-recycling factor OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=frr PE=3 SV=1 gi\|15799854, gi\|... - gi\|15799854\|ref\|NP_285866.1\| ribosome recycling factor [Escherichia coli O157:H7 EDL933], gi\|1251289... RRF_ECOSE - Ribosome-recycling factor OS=Escherichia coli (strain SE11) GN=frr PE=3 SV=1 RRF_ECO27 - Ribosome-recycling factor OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=frr PE=3 SV=1 gi\|217321359, gi... - gi\|217325138\|ref\|ZP_03441222.1\| ribosome releasing factor [Escherichia coli O157:H7 str. TW14588], g... gi\|189357057, gi... - gi\|189357057\|gb\|EDU75476.1\| ribosome releasing factor [Escherichia coli O157:H7 str. EC4401], gi\|168... gi\|189365640, gi... - gi\|189365640\|gb\|EDU84056.1\| ribosome releasing factor [Escherichia coli O157:H7 str. EC4501], gi\|168... gi\|189360728, gi... - gi\|189360728\|gb\|EDU79147.1\| ribosome releasing factor [Escherichia coli O157:H7 str. EC4486], gi\|168... gi\|168777009, gi... - gi\|187767671\|gb\|EDU31515.1\| ribosome releasing factor [Escherichia coli O157:H7 str. EC4196], gi\|168... gi\|189000476, gi... - gi\|189000476\|gb\|EDU69462.1\| ribosome releasing factor [Escherichia coli O157:H7 str. EC4076], gi\|168... gi\|168789281, gi... - gi\|189371119\|gb\|EDU89535.1\| ribosome releasing factor [Escherichia coli O157:H7 str. EC869], gi\|1687... RRF_ECODH - Ribosome-recycling factor OS=Escherichia coli (strain K12 / DH10B) GN=frr PE=3 SV=1 RRF_ECOSM - Ribosome-recycling factor OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=frr PE=3 SV=1 RRF_ESCF3 - Ribosome-recycling factor OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN... RRF_ECO8A - Ribosome-recycling factor OS=Escherichia coli O8 (strain IAI1) GN=frr PE=3 SV=1 RRF_ECO45 - Ribosome-recycling factor OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=frr PE=3 SV=1 RRF_ECO81 - Ribosome-recycling factor OS=Escherichia coli O81 (strain ED1a) GN=frr PE=3 SV=1 RRF_ECO55 - Ribosome-recycling factor OS=Escherichia coli (strain 55989 / EAEC) GN=frr PE=3 SV=1 RRF_ECO7I - Ribosome-recycling factor OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=frr PE=3 SV=1 RRF_ECOLC - Ribosome-recycling factor OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=frr PE=3 SV=... RRF_ECOLU - Ribosome-recycling factor OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=frr PE=3 SV=1 RRF_SHIFL - Ribosome-recycling factor OS=Shigella flexneri GN=frr PE=3 SV=1 EG10335 - ribosome recycling factor / Ribosome recycling factor (RRF); dissociates ribosomes from mRNA after t... RRF_ECOLI - Ribosome recycling factor (Ribosome-releasing factor) (RRF) - Escherichia coli gi\|75258839, gi\|... - gi\|75258839\|ref\|ZP_00730229.1\| COG0233: Ribosome recycling factor [Escherichia coli E22], gi\|1930632... gi\|190906953, gi... - gi\|75240239\|ref\|ZP_00724186.1\| COG0233: Ribosome recycling factor [Escherichia coli F11], gi\|1911728... gi\|75238875, gi\|... - gi\|75238875\|ref\|ZP_00722857.1\| COG0233: Ribosome recycling factor [Escherichia coli E110019], gi\|193... gi\|75230467, gi\|... - gi\|75230467\|ref\|ZP_00716948.1\| COG0233: Ribosome recycling factor [Escherichia coli B7A], gi\|1911663... RRF_SHIBS - Ribosome-recycling factor OS=Shigella boydii serotype 4 (strain Sb227) GN=frr PE=3 SV=1 RRF_SHIDS - Ribosome-recycling factor OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=frr PE=3 SV=1 sp\|B7UIL7\|RRF_ECO27 - Ribosome-recycling factor OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=frr PE=3 SV=1 RRF_SHISS - Ribosome-recycling factor OS=Shigella sonnei (strain Ss046) GN=frr PE=3 SV=1 gi\|75512184, gi\|... - gi\|75512184\|ref\|ZP_00734756.1\| COG0233: Ribosome recycling factor [Escherichia coli 53638], gi\|18849... gi\|83585488, gi\|... - gi\|83585488\|ref\|ZP_00924133.1\| COG0233: Ribosome recycling factor [Escherichia coli 101-1], gi\|19443... gi\|194433418, gi... - gi\|83569754\|ref\|ZP_00921204.1\| COG0233: Ribosome recycling factor [Shigella dysenteriae 1012], gi\|19... gi\|194428316, gi... - gi\|75210495\|ref\|ZP_00710646.1\| COG0233: Ribosome recycling factor [Escherichia coli B171], gi\|194428... RRF_ECOHS - Ribosome-recycling factor OS=Escherichia coli O9:H4 (strain HS) GN=frr PE=3 SV=1 RRF_ECO24 - Ribosome-recycling factor OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=frr PE=3 SV=1 RRF_ECOL6 - Ribosome-recycling factor OS=Escherichia coli O6 GN=frr PE=3 SV=1 RRF_SHIB3 - Ribosome-recycling factor OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=frr PE=3 SV... gi\|188014582, gi... - gi\|188014582\|gb\|EDU52704.1\| ribosome releasing factor [Escherichia coli O157:H7 str. EC4113], gi\|168... gi\|254590705, gi... - gi\|254791305\|ref\|YP_003076142.1\| ribosome recycling factor [Escherichia coli O157:H7 str. TW14359], ... gi\|254160291, gi... - gi\|254160291\|ref\|YP_003043399.1\| ribosome releasing factor [Escherichia coli B str. REL606], gi\|2539... gi\|226840697, gi... - gi\|254037591\|ref\|ZP_04871668.1\| ribosome-recycling factor [Escherichia sp. 1_1_43], gi\|226840697\|gb\|... gi\|253774801, gi... - gi\|254287094\|ref\|YP_003052842.1\| ribosome releasing factor [Escherichia coli BL21(DE3)], gi\|25397640... gi\|242376003, gi... - gi\|251783730\|ref\|YP_002998034.1\| hypothetical protein B21_00169 [Escherichia coli BL21], gi\|24237600... RRF_ECOBW - Ribosome-recycling factor OS=Escherichia coli (strain K12 / MC4100 / BW2952) GN=frr PE=3 SV=1 gi\|226902243, gi... - gi\|237704331\|ref\|ZP_04534812.1\| ribosome-recycling factor [Escherichia sp. 3_2_53FAA], gi\|226902243\|... gi\|227884915, gi... - gi\|227884915\|ref\|ZP_04002720.1\| ribosome recycling factor [Escherichia coli 83972], gi\|227838053\|gb\|... gi\|21239027, gi\|... - gi\|89107052\|ref\|AP_000832.1\| ribosome recycling factor [Escherichia coli str. K-12 substr. W3110], g... gi\|124529604, gi... - gi\|124529604\|ref\|ZP_01700548.1\| ribosome recycling factor [Escherichia coli B], gi\|124499760\|gb\|EAY4... RRF_ECOUT - Ribosome-recycling factor OS=Escherichia coli (strain UTI89 / UPEC) GN=frr PE=3 SV=1 gi\|13359630, gi\|... - gi\|15829428\|ref\|NP_308201.1\| ribosome recycling factor [Escherichia coli O157:H7 str. Sakai], gi\|133... RRF_ECOL5 - Ribosome-recycling factor OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=frr PE=3 SV=1 RRF_SHIF8 - Ribosome-recycling factor OS=Shigella flexneri serotype 5b (strain 8401) GN=frr PE=3 SV=1	4.0E-70	[1..185]	[1..185]
RRF_PHOLL - Ribosome-recycling factor OS=Photorhabdus luminescens subsp. laumondii GN=frr PE=3 SV=1 RRF_PHOLL - Ribosome-recycling factor OS=Photorhabdus luminescens subsp. laumondii (strain DSM 15139 / CIP 10556...	3.0E-69	[1..185]	[1..185]
gi\|37926485 - gi\|37926485\|pdb\|1ISE\|A Chain A, Crystal Structure Of A Mutant Of Ribosome Recycling Factor From Esch...	3.0E-69	[1..185]	[1..185]
RRF_YERPG - Ribosome-recycling factor OS=Yersinia pestis bv. Antiqua (strain Angola) GN=frr PE=3 SV=1 RRF_YERP3 - Ribosome-recycling factor OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=frr PE=3... gi\|45442572, gi\|... - gi\|45442572\|ref\|NP_994111.1\| ribosome recycling factor [Yersinia pestis biovar Microtus str. 91001],... gi\|22127009, gi\|... - gi\|22127009\|ref\|NP_670432.1\| ribosome recycling factor [Yersinia pestis KIM], gi\|21960056\|gb\|AAM8668... gi\|15979114, gi\|... - gi\|218928215\|ref\|YP_002346090.1\| ribosome recycling factor [Yersinia pestis CO92], gi\|16121347\|ref\|N... gi\|229843077, gi... - gi\|229843077\|ref\|ZP_04463227.1\| ribosome recycling factor [Yersinia pestis biovar Orientalis str. In... RRF_YERPS - Ribosome-recycling factor OS=Yersinia pseudotuberculosis serotype I (strain IP32953) GN=frr PE=3 SV=... gi\|229840976, gi... - gi\|229840976\|ref\|ZP_04461135.1\| ribosome recycling factor [Yersinia pestis biovar Orientalis str. PE... gi\|229837754, gi... - gi\|229837754\|ref\|ZP_04457914.1\| ribosome recycling factor [Yersinia pestis Pestoides A], gi\|22970413... gi\|89105137, gi\|... - gi\|89105137\|ref\|ZP_01177662.1\| COG0233: Ribosome recycling factor [Yersinia pestis biovar Orientalis... RRF_YERPS - Ribosome-recycling factor OS=Yersinia pseudotuberculosis GN=frr PE=3 SV=1 RRF_YERPA - Ribosome-recycling factor OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=frr PE=3 SV=1 RRF_YERPN - Ribosome-recycling factor OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=frr PE=3 SV=1 gi\|166011931, gi... - gi\|166011931\|ref\|ZP_02232829.1\| ribosome recycling factor [Yersinia pestis biovar Antiqua str. E1979... gi\|166211643, gi... - gi\|166211643\|ref\|ZP_02237678.1\| ribosome recycling factor [Yersinia pestis biovar Antiqua str. B4200... gi\|167399872, gi... - gi\|167399872\|ref\|ZP_02305390.1\| ribosome recycling factor [Yersinia pestis biovar Antiqua str. UG05-... gi\|167419665, gi... - gi\|167419665\|ref\|ZP_02311418.1\| ribosome recycling factor [Yersinia pestis biovar Orientalis str. MG... RRF_YERPP - Ribosome-recycling factor OS=Yersinia pestis (strain Pestoides F) GN=frr PE=3 SV=1 gi\|167055636, gi... - gi\|167425236\|ref\|ZP_02316989.1\| ribosome recycling factor [Yersinia pestis biovar Mediaevalis str. K... RRF_YERPE - Ribosome-recycling factor OS=Yersinia pestis GN=frr PE=3 SV=1 gi\|149366952, gi... - gi\|149366952\|ref\|ZP_01888985.1\| ribosome recycling factor [Yersinia pestis CA88-4125], gi\|149290566\|... gi\|167470429 - gi\|167470429\|ref\|ZP_02335133.1\| ribosome recycling factor [Yersinia pestis FV-1] RRF_YERPY - Ribosome-recycling factor OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=frr PE=3 SV=... RRF_YERPB - Ribosome-recycling factor OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=frr PE=3 SV=1 gi\|165920967, gi... - gi\|165927071\|ref\|ZP_02222903.1\| ribosome recycling factor [Yersinia pestis biovar Orientalis str. F1...	5.0E-69	[1..185]	[1..185]
RRF_SALPK - Ribosome-recycling factor OS=Salmonella paratyphi A (strain AKU_12601) GN=frr PE=3 SV=1 RRF_SALPA - Ribosome-recycling factor OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42) GN=frr PE=3 SV=1 RRF_SALPA - Ribosome-recycling factor OS=Salmonella paratyphi A GN=frr PE=3 SV=1	1.0E-68	[1..185]	[1..185]
RRF_HISS2 - Ribosome-recycling factor OS=Histophilus somni (strain 2336) GN=frr PE=3 SV=1 RRF_HAES1 - Ribosome-recycling factor OS=Haemophilus somnus (strain 129Pt) GN=frr PE=3 SV=1	1.0E-68	[1..185]	[1..185]
RRF_LEGPL - Ribosome-recycling factor OS=Legionella pneumophila (strain Lens) GN=frr PE=3 SV=1 RRF_LEGPC - Ribosome-recycling factor OS=Legionella pneumophila (strain Corby) GN=frr PE=3 SV=1 RRF_LEGPH - Ribosome-recycling factor OS=Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC...	1.0E-68	[1..184]	[1..184]
RRF_LEGPA - Ribosome-recycling factor OS=Legionella pneumophila (strain Paris) GN=frr PE=3 SV=1	1.0E-68	[1..184]	[1..184]
RRF_PASMU - Ribosome-recycling factor OS=Pasteurella multocida GN=frr PE=3 SV=1 RRF_PASMU - Ribosome-recycling factor OS=Pasteurella multocida (strain Pm70) GN=frr PE=3 SV=1	2.0E-68	[1..185]	[1..185]

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Predicted Domain #1

Region A:
Residues: [1-185]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MISDIRKDAE VRMEKCVEAF KTQISKVRTG RASPSLLDGI VVEYYGTPTP LRQLASVTVE  60
   61 DSRTLKINVF DRSMGPAVEK AIMASDLGLN PSSAGTDIRV PLPPLTEERR KDLTKIVRGE 120
  121 AEQARVAVRN VRRDANDKVK ALLKDKAISE DDDRRSQEEV QKMTDAAIKK VDAALADKEA 180
  181 ELMQF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	71.522879
Match:	1ek8A
Description:	Ribosome recycling factor, RRF
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
translation regulator activity	4.3587179630028	bayes_pls_golite062009
translation factor activity, nucleic acid binding	4.16037247039451	bayes_pls_golite062009
nucleic acid binding	3.79085926340206	bayes_pls_golite062009
binding	2.89152455528061	bayes_pls_golite062009
translation termination factor activity	2.10810503428749	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: