YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|237704333, gi...
Organism:	Escherichia sp. 3_2_53FAA
Length:	253 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|237704333, gi....

Description	E-value	Query Range	Subject Range
UPPS_THETN - Undecaprenyl pyrophosphate synthase OS=Thermoanaerobacter tengcongensis GN=uppS PE=3 SV=1 gi\|223488732, gi... - gi\|254479462\|ref\|ZP_05092789.1\| undecaprenyl pyrophosphate synthetase 1 [Carboxydibrachium pacificum... ISPT_CALS4 - Isoprenyl transferase OS=Caldanaerobacter subterraneus subsp. tengcongensis (strain DSM 15242 / JCM ...	369.0	[0..2]	[246..3]
gi\|167037632, gi... - gi\|76796454\|ref\|ZP_00778816.1\| Di-trans-poly-cis-decaprenylcistransferase [Thermoanaerobacter ethano... gi\|241903183, gi... - gi\|241903183\|ref\|ZP_04787910.1\| undecaprenyl diphosphate synthase [Thermoanaerobacter brockii subsp....	357.0	[0..11]	[246..14]
gi\|166854533, gi... - gi\|167040293\|ref\|YP_001663278.1\| undecaprenyl diphosphate synthase [Thermoanaerobacter sp. X514], gi... gi\|242258359, gi... - gi\|242258359\|ref\|ZP_04803172.1\| undecaprenyl diphosphate synthase [Thermoanaerobacter sp. X513], gi\|...	356.0	[0..11]	[246..14]
gi\|170714048, gi... - gi\|170714048\|gb\|EDT26230.1\| undecaprenyl diphosphate synthase [Clostridium perfringens CPE str. F496... gi\|110676017, gi... - gi\|110801370\|ref\|YP_696383.1\| undecaprenyl diphosphate synthase [Clostridium perfringens ATCC 13124]... gi\|182380984, gi... - gi\|182380984\|gb\|EDT78463.1\| undecaprenyl diphosphate synthase [Clostridium perfringens NCTC 8239], g... ISPT_CLOPE - Isoprenyl transferase OS=Clostridium perfringens (strain 13 / Type A) GN=uppS PE=3 SV=1 gi\|169299227, gi... - gi\|169342721\|ref\|ZP_02863762.1\| undecaprenyl diphosphate synthase [Clostridium perfringens C str. JG... gi\|177907477, gi... - gi\|182627140\|ref\|ZP_02954855.1\| undecaprenyl diphosphate synthase [Clostridium perfringens D str. JG... gi\|110803535, gi... - gi\|110803535\|ref\|YP_698983.1\| undecaprenyl diphosphate synthase [Clostridium perfringens SM101], gi\|... gi\|168208113, gi... - gi\|170660606\|gb\|EDT13289.1\| undecaprenyl diphosphate synthase [Clostridium perfringens E str. JGS198... UPPS_CLOPE - Undecaprenyl pyrophosphate synthase OS=Clostridium perfringens GN=uppS PE=3 SV=1 gi\|170710581, gi... - gi\|170710581\|gb\|EDT22763.1\| undecaprenyl diphosphate synthase [Clostridium perfringens B str. ATCC 3...	352.0	[0..15]	[247..21]
gi\|82542773, gi\|... - gi\|82542773\|ref\|YP_406720.1\| undecaprenyl pyrophosphate synthase [Shigella boydii Sb227], gi\|8124418...	350.0	[0..1]	[253..1]
gi\|73854271, gi\|... - gi\|74310794\|ref\|YP_309213.1\| undecaprenyl pyrophosphate synthase [Shigella sonnei Ss046], gi\|7385427...	350.0	[0..1]	[253..1]
gi\|88806905, gi\|... - gi\|88806905\|ref\|ZP_01122421.1\| Undecaprenyl pyrophosphate synthase [Robiginitalea biformata HTCC2501...	350.0	[0..9]	[250..4]
gi\|187731191, gi... - gi\|75176481\|ref\|ZP_00696618.1\| COG0020: Undecaprenyl pyrophosphate synthase [Shigella boydii BS512],...	349.0	[0..2]	[253..1]
gi\|1552751 - gi\|1552751\|gb\|AAB08603.1\| hypothetical protein [Escherichia coli] gi\|110804226, gi... - gi\|110804226\|ref\|YP_687746.1\| undecaprenyl pyrophosphate synthase [Shigella flexneri 5 str. 8401], g... gi\|83585490 - gi\|83585490\|ref\|ZP_00924135.1\| COG0020: Undecaprenyl pyrophosphate synthase [Escherichia coli 101-1] gi\|253325843, gi... - gi\|253774799\|ref\|YP_003037630.1\| undecaprenyl diphosphate synthase [Escherichia coli BL21(DE3)], gi\|... tr\|A0A0X8U7C9\|A0... - UDP pyrophosphate synthase OS=Escherichia coli (strain K12) GN=C3026_00795 PE=4 SV=1 gi\|157155987, gi... - gi\|75189269\|ref\|ZP_00702536.1\| COG0020: Undecaprenyl pyrophosphate synthase [Escherichia coli E24377... gi\|75194384, gi\|... - gi\|75194384\|ref\|ZP_00704454.1\| COG0020: Undecaprenyl pyrophosphate synthase [Escherichia coli HS], g... gi\|75210497 - gi\|75210497\|ref\|ZP_00710648.1\| COG0020: Undecaprenyl pyrophosphate synthase [Escherichia coli B171] gi\|75230465 - gi\|75230465\|ref\|ZP_00716946.1\| COG0020: Undecaprenyl pyrophosphate synthase [Escherichia coli B7A] gi\|195938144 - gi\|195938144\|ref\|ZP_03083526.1\| undecaprenyl pyrophosphate synthase [Escherichia coli O157:H7 str. E... gi\|75238877 - gi\|75238877\|ref\|ZP_00722859.1\| COG0020: Undecaprenyl pyrophosphate synthase [Escherichia coli E11001... gi\|209917364, gi... - gi\|209917364\|ref\|YP_002291448.1\| undecaprenyl pyrophosphate synthase [Escherichia coli SE11], gi\|209... gi\|75240237 - gi\|75240237\|ref\|ZP_00724184.1\| COG0020: Undecaprenyl pyrophosphate synthase [Escherichia coli F11] gi\|75258835 - gi\|75258835\|ref\|ZP_00730225.1\| COG0020: Undecaprenyl pyrophosphate synthase [Escherichia coli E22]	348.0	[0..2]	[253..1]
gi\|188489904, gi... - gi\|75512186\|ref\|ZP_00734758.1\| COG0020: Undecaprenyl pyrophosphate synthase [Escherichia coli 53638]...	348.0	[0..2]	[253..1]

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Predicted Domain #1

Region A:
Residues: [1-253]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMLSATQPLS EKLPAHGCRH VAIIMDGNGR WAKKQGKIRA FGHKAGAKSV RRAVSFAANN  60
   61 GIEALTLYAF SSENWNRPAQ EVSALMELFV WALDSEVKSL HRHNVRLRII GDTSRFNSRL 120
  121 QERIRKSEAL TAGNTGLTLN IAANYGGRWD IVQGVRQLAE KVQQGNLQPD QIDEEMLNQH 180
  181 VCMHELAPVD LVIRTGGEHR ISNFLLWQIA YAELYFTDVL WPDFDEQDFE GALNAFANRE 240
  241 RRFGGTEPGD ETA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	97.09691
Match:	1jp3A
Description:	Undecaprenyl diphosphate synthase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
prenyltransferase activity	4.40397054534951	bayes_pls_golite062009
di-trans,poly-cis-decaprenylcistransferase activity	3.07573514495519	bayes_pls_golite062009
transferase activity	1.42376896518855	bayes_pls_golite062009
catalytic activity	0.878978773660153	bayes_pls_golite062009
dehydrodolichyl diphosphate synthase activity	0.761527128946352	bayes_pls_golite062009
binding	0.747530931796963	bayes_pls_golite062009
protein binding	0.746384987072271	bayes_pls_golite062009
transferase activity, transferring alkyl or aryl (other than methyl) groups	0.256467886977999	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: