YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|227008496, gi...
Organism:	Vibrio cholerae M66-2
Length:	177 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|227008496, gi....

Description	E-value	Query Range	Subject Range
gi\|3851548 - gi\|3851548\|gb\|AAC72352.1\| single strand DNA-binding protein; SSB [Vibrio cholerae]	237.0	[0..1]	[177..16]
gi\|149740690, gi... - gi\|153825660\|ref\|ZP_01978327.1\| single-strand binding protein [Vibrio cholerae MZO-2], gi\|149740690\|... gi\|116217618, gi... - gi\|75823980\|ref\|ZP_00753451.1\| COG0629: Single-stranded DNA-binding protein [Vibrio cholerae RC385],... gi\|124122241, gi... - gi\|153802217\|ref\|ZP_01956803.1\| single-strand binding protein [Vibrio cholerae MZO-3], gi\|124122241\|... tr\|A2PTS8\|A2PTS8... - Single-stranded DNA-binding protein OS=Vibrio cholerae GN=ssb PE=3 SV=1, Single-stranded DNA-binding... gi\|254291302, gi... - gi\|254291302\|ref\|ZP_04962096.1\| single-strand binding protein [Vibrio cholerae AM-19226], gi\|1977513... gi\|148875218, gi... - gi\|153829318\|ref\|ZP_01981985.1\| single-strand binding protein [Vibrio cholerae 623-39], gi\|148875218...	235.0	[0..1]	[177..1]
gi\|84780626, gi\|... - gi\|85060106\|ref\|YP_455808.1\| single-strand DNA-binding protein [Sodalis glossinidius str. 'morsitans...	218.0	[0..1]	[177..1]
SSB_SERMA - Single-stranded DNA-binding protein OS=Serratia marcescens GN=ssb PE=1 SV=2	218.0	[0..1]	[177..1]
gi\|147870 - gi\|147870\|gb\|AAA24649.1\| single-strand DNA-binding protein (ssb) [Escherichia coli]	217.0	[0..1]	[177..1]
gi\|226901544, gi... - gi\|237703632\|ref\|ZP_04534113.1\| single strand DNA-binding protein [Escherichia sp. 3_2_53FAA], gi\|22... gi\|226840164, gi... - gi\|254037058\|ref\|ZP_04871135.1\| single strand DNA-binding protein [Escherichia sp. 1_1_43], gi\|22684... gi\|24054654, gi\|... - ref\|NP_709860.1\| ssDNA-binding protein [Shigella flexneri 2a str. 301], gb\|AAN45567.1\| ssDNA-bindin... gi\|91075172, gi\|... - gi\|91213598\|ref\|YP_543584.1\| single strand DNA-binding protein [Escherichia coli UTI89], gi\|91075172...	216.0	[0..1]	[177..22]
gi\|81243673, gi\|... - gi\|82779525\|ref\|YP_405874.1\| single-strand DNA-binding protein [Shigella dysenteriae Sd197], gi\|8124...	216.0	[0..1]	[177..1]
gi\|218697768, gi... - gi\|218697768\|ref\|YP_002405435.1\| single-stranded DNA-binding protein [Escherichia coli 55989], gi\|21... gi\|218372710, gi... - gi\|218702724\|ref\|YP_002410353.1\| single-stranded DNA-binding protein [Escherichia coli IAI39], gi\|21... gi\|218434778, gi... - gi\|218707681\|ref\|YP_002415200.1\| single-stranded DNA-binding protein [Escherichia coli UMN026], gi\|2... gi\|15834295, gi\|... - gi\|15834295\|ref\|NP_313068.1\| single-stranded DNA-binding protein [Escherichia coli O157:H7 str. Saka... gi\|110644406, gi... - gi\|110644406\|ref\|YP_672136.1\| single-stranded DNA-binding protein [Escherichia coli 536], gi\|1103459... gi\|110617472, gi... - gi\|110807924\|ref\|YP_691444.1\| single-strand DNA-binding protein [Shigella flexneri 5 str. 8401], gi\|... SSB_SHIFL - Single-stranded DNA-binding protein OS=Shigella flexneri GN=ssb PE=3 SV=2 gi\|168748095, gi... - gi\|188017416\|gb\|EDU55538.1\| single-stranded DNA-binding protein [Escherichia coli O157:H7 str. EC411... SSB_ECOLI - Single-stranded DNA-binding protein (SSB) (Helix-destabilizing protein) - Escherichia coli gi\|168755227, gi... - gi\|189357468\|gb\|EDU75887.1\| single-stranded DNA-binding protein [Escherichia coli O157:H7 str. EC440... SSB_ECOL6 - Single-stranded DNA-binding protein OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) G... gi\|168760906, gi... - gi\|189368538\|gb\|EDU86954.1\| single-stranded DNA-binding protein [Escherichia coli O157:H7 str. EC450... gi\|30042907, gi\|... - gi\|30064648\|ref\|NP_838819.1\| single-strand DNA-binding protein [Shigella flexneri 2a str. 2457T], gi... gi\|189364141, gi... - gi\|189364141\|gb\|EDU82560.1\| single-stranded DNA-binding protein [Escherichia coli O157:H7 str. EC448... SSB_ECO57 - Single-stranded DNA-binding protein OS=Escherichia coli O157:H7 GN=ssb PE=3 SV=2 gi\|168774415, gi... - gi\|187769924\|gb\|EDU33768.1\| single-stranded DNA-binding protein [Escherichia coli O157:H7 str. EC419... EG10976 - single-stranded DNA-binding protein / Single-stranded DNA-binding protein; alkali-inducible; homotet... gi\|168780470, gi... - gi\|189001691\|gb\|EDU70677.1\| single-stranded DNA-binding protein [Escherichia coli O157:H7 str. EC407... gi\|189374931, gi... - gi\|189374931\|gb\|EDU93347.1\| single-stranded DNA-binding protein [Escherichia coli O157:H7 str. EC869... gi\|189379074, gi... - gi\|189379074\|gb\|EDU97490.1\| single-stranded DNA-binding protein [Escherichia coli O157:H7 str. EC508... gi\|82546402, gi\|... - gi\|82546402\|ref\|YP_410349.1\| single-strand DNA-binding protein [Shigella boydii Sb227], gi\|81247813\|... gi\|85676811, gi\|... - gi\|89110780\|ref\|AP_004560.1\| Single-stranded DNA-binding protein [Escherichia coli str. K-12 substr.... gi\|73858030, gi\|... - gi\|74314553\|ref\|YP_312972.1\| single-strand DNA-binding protein [Shigella sonnei Ss046], gi\|73858030\|... SSB_ECOL6 - Single-stranded DNA-binding protein OS=Escherichia coli O6 GN=ssb PE=3 SV=2 gi\|56384074, gi\|... - gi\|56480523\|ref\|NP_709860.2\| single-strand DNA-binding protein [Shigella flexneri 2a str. 301], gi\|5... gi\|162138311 - gi\|162138311\|ref\|YP_543584.2\| single-strand DNA-binding protein [Escherichia coli UTI89] gi\|162317560 - gi\|162317560\|ref\|YP_859663.2\| single-strand DNA-binding protein [Escherichia coli APEC O1] gi\|75211987, gi\|... - gi\|75211987\|ref\|ZP_00712042.1\| COG0629: Single-stranded DNA-binding protein [Escherichia coli B171],... gi\|209397137, gi... - gi\|209397137\|ref\|YP_002273599.1\| single-stranded DNA-binding protein [Escherichia coli O157:H7 str. ... gi\|190901176, gi... - gi\|75227985\|ref\|ZP_00714676.1\| COG0629: Single-stranded DNA-binding protein [Escherichia coli B7A], ... gi\|209921544, gi... - gi\|209921544\|ref\|YP_002295628.1\| single-stranded DNA-binding protein [Escherichia coli SE11], gi\|209... gi\|157158944, gi... - gi\|75188783\|ref\|ZP_00702050.1\| COG0629: Single-stranded DNA-binding protein [Escherichia coli E24377... gi\|215489405, gi... - gi\|215489405\|ref\|YP_002331836.1\| single-stranded DNA-binding protein [Escherichia coli O127:H6 str. ... gi\|227836060, gi... - gi\|227886919\|ref\|ZP_04004724.1\| single-stranded DNA-binding protein [Escherichia coli 83972], gi\|227... gi\|157163528, gi... - gi\|75197918\|ref\|ZP_00707988.1\| COG0629: Single-stranded DNA-binding protein [Escherichia coli HS], g... gi\|217320876, gi... - gi\|217324655\|ref\|ZP_03440739.1\| single-stranded DNA-binding protein [Escherichia coli O157:H7 str. T... gi\|238903169, gi... - gi\|238903169\|ref\|YP_002928965.1\| single-stranded DNA-binding protein [Escherichia coli BW2952], gi\|2... gi\|75258977, gi\|... - gi\|75258977\|ref\|ZP_00730345.1\| COG0629: Single-stranded DNA-binding protein [Escherichia coli E22], ... gi\|218358922, gi... - gi\|218551380\|ref\|YP_002385172.1\| single-stranded DNA-binding protein [Escherichia fergusonii ATCC 35... gi\|242379587, gi... - gi\|251787314\|ref\|YP_003001618.1\| hypothetical protein B21_03891 [Escherichia coli BL21], gi\|24237958... gi\|75514818, gi\|... - gi\|75514818\|ref\|ZP_00737047.1\| COG0629: Single-stranded DNA-binding protein [Escherichia coli 53638]... gi\|218363386, gi... - gi\|218556617\|ref\|YP_002389531.1\| single-stranded DNA-binding protein [Escherichia coli IAI1], gi\|218... gi\|253980052, gi... - gi\|254290745\|ref\|YP_003056493.1\| single-strand DNA-binding protein [Escherichia coli BL21(DE3)], gi\|... gi\|192958856, gi... - gi\|75238595\|ref\|ZP_00722584.1\| COG0629: Single-stranded DNA-binding protein [Escherichia coli E11001... gi\|218561142, gi... - gi\|218561142\|ref\|YP_002394055.1\| single-stranded DNA-binding protein [Escherichia coli S88], gi\|2183... gi\|253975896, gi... - gi\|254163995\|ref\|YP_003047103.1\| single-strand DNA-binding protein [Escherichia coli B str. REL606],... gi\|75241099, gi\|... - gi\|75241099\|ref\|ZP_00724973.1\| COG0629: Single-stranded DNA-binding protein [Escherichia coli F11], ... gi\|218692349, gi... - gi\|218692349\|ref\|YP_002400561.1\| single-stranded DNA-binding protein [Escherichia coli ED1a], gi\|218... gi\|254796079, gi... - gi\|254796079\|ref\|YP_003080916.1\| Single-stranded DNA-binding protein [Escherichia coli O157:H7 str. ... gi\|170021942, gi... - gi\|170021942\|ref\|YP_001726896.1\| single-stranded DNA-binding protein [Escherichia coli ATCC 8739], g... gi\|169891350, gi... - gi\|170083515\|ref\|YP_001732835.1\| single-stranded DNA-binding protein [Escherichia coli str. K-12 sub... gi\|170520013, gi... - gi\|170682295\|ref\|YP_001746449.1\| single-stranded DNA-binding protein [Escherichia coli SMS-3-5], gi\|... gi\|194432319, gi... - gi\|194432319\|ref\|ZP_03064607.1\| single-stranded DNA-binding protein [Shigella dysenteriae 1012], gi\|... gi\|195935843 - gi\|195935843\|ref\|ZP_03081225.1\| single-strand DNA-binding protein [Escherichia coli O157:H7 str. EC4... gi\|83587182, gi\|... - gi\|83587182\|ref\|ZP_00925811.1\| COG0629: Single-stranded DNA-binding protein [Escherichia coli 101-1]... gi\|208726257, gi... - gi\|208806456\|ref\|ZP_03248793.1\| single-stranded DNA-binding protein [Escherichia coli O157:H7 str. E... gi\|208735285, gi... - gi\|208814008\|ref\|ZP_03255337.1\| single-stranded DNA-binding protein [Escherichia coli O157:H7 str. E... gi\|208738557, gi... - gi\|208818434\|ref\|ZP_03258754.1\| single-stranded DNA-binding protein [Escherichia coli O157:H7 str. E... EG10976 - single-stranded DNA-binding protein / Single-stranded DNA-binding protein; alkali-inducible; homotet... gi\|124527698, gi... - gi\|124527698\|ref\|ZP_01699133.1\| single-strand binding protein [Escherichia coli B], gi\|124501141\|gb\|...	216.0	[0..1]	[177..1]
gi\|117626340, gi... - gi\|117626340\|ref\|YP_859663.1\| single strand DNA-binding protein [Escherichia coli APEC O1], gi\|11551...	215.0	[0..1]	[177..20]
gi\|75179580, gi\|... - gi\|75179580\|ref\|ZP_00699584.1\| COG0629: Single-stranded DNA-binding protein [Shigella boydii BS512],...	215.0	[0..1]	[177..1]

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Predicted Domain #1

Region A:
Residues: [1-177]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASRGVNKVI LIGNLGQDPE VRYMPSGGAV ANITIATSET WRDKATGEQK EKTEWHRVTL  60
   61 YGKLAEVAGE YLRKGSQVYI EGQLQTRKWQ DQSGQDRYST EVVVQGYNGI MQMLGGRAQQ 120
  121 GGMPAQGGMN VPAQQGSWGQ PQQPAKQHQP MQQSAPQQYS QPQYNEPPMD FDDDIPF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	56.522879
Match:	1eqqA
Description:	SINGLE STRANDED DNA BINDING PROTEIN AND SSDNA COMPLEX
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
nucleic acid binding	1.65948797337693	bayes_pls_golite062009
single-stranded DNA binding	1.38758756313423	bayes_pls_golite062009
structure-specific DNA binding	1.30327082958682	bayes_pls_golite062009
binding	0.902189695502298	bayes_pls_golite062009
DNA binding	0.9001707539121	bayes_pls_golite062009
structural constituent of ribosome	0.0989196136046104	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: