YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|253725116, gi...
Organism:	Staphylococcus aureus subsp. aureus USA300_TCH959
Length:	156 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|253725116, gi....

Description	E-value	Query Range	Subject Range
gi\|220706744, gi... - gi\|221089318\|ref\|ZP_03558838.1\| ribosomal protein S7 [Geobacillus sp. Y412MC61], gi\|220706744\|gb\|EED... gi\|229499926, gi... - gi\|229499926\|ref\|ZP_04393603.1\| ribosomal protein S7 [Geobacillus sp. Y412MC52], gi\|229329205\|gb\|EEN... RS7_GEOKA - 30S ribosomal protein S7 OS=Geobacillus kaustophilus GN=rpsG PE=3 SV=1 RS7_GEOKA - 30S ribosomal protein S7 OS=Geobacillus kaustophilus (strain HTA426) GN=rpsG PE=3 SV=1	217.0	[0..1]	[156..1]
RS7_GEOSE - 30S ribosomal protein S7 OS=Geobacillus stearothermophilus GN=rpsG PE=1 SV=3	217.0	[0..1]	[156..1]
RS7_RHILO - 30S ribosomal protein S7 OS=Rhizobium loti (strain MAFF303099) GN=rpsG PE=3 SV=1 RS7_RHILO - 30S ribosomal protein S7 OS=Rhizobium loti GN=rpsG PE=3 SV=1	215.0	[0..1]	[156..1]
RS7_AGRFC - 30S ribosomal protein S7 OS=Agrobacterium fabrum (strain C58 / ATCC 33970) GN=rpsG PE=3 SV=1 gi\|25294576, gi\|... - gi\|25294576\|pir\|\|AD2816 30S ribosomal protein S7 [imported] - Agrobacterium tumefaciens (strain C58,...	214.0	[0..1]	[156..1]
RS7_CARHZ - 30S ribosomal protein S7 OS=Carboxydothermus hydrogenoformans (strain ATCC BAA-161 / DSM 6008 / Z-29...	214.0	[0..1]	[156..1]
gi\|196253511, gi... - gi\|196253511\|ref\|ZP_03152135.1\| ribosomal protein S7 [Clostridium thermocellum DSM 4150], gi\|1961970... RS7_CLOTH - 30S ribosomal protein S7 OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237 / NBRC 103400 / N...	213.0	[0..1]	[156..1]
RS7_BRASB - 30S ribosomal protein S7 OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=rpsG PE=3 SV=1	212.0	[0..1]	[156..1]
RS7_BACAH - 30S ribosomal protein S7 OS=Bacillus thuringiensis (strain Al Hakam) GN=rpsG PE=3 SV=1 RS7_BACC0 - 30S ribosomal protein S7 OS=Bacillus cereus (strain AH820) GN=rpsG PE=3 SV=1 RS7_BACC7 - 30S ribosomal protein S7 OS=Bacillus cereus (strain AH187) GN=rpsG PE=3 SV=1 RS7_BACCQ - 30S ribosomal protein S7 OS=Bacillus cereus (strain Q1) GN=rpsG PE=3 SV=1 gi\|228912845, gi... - gi\|228912845\|ref\|ZP_04076492.1\| 30S ribosomal protein S7 [Bacillus thuringiensis serovar pulsiensis ... gi\|228925359, gi... - gi\|228925359\|ref\|ZP_04088455.1\| 30S ribosomal protein S7 [Bacillus thuringiensis serovar pondicherie... RS7_BACC3 - 30S ribosomal protein S7 OS=Bacillus cereus (strain 03BB102) GN=rpsG PE=3 SV=1 RS7_BACAC - 30S ribosomal protein S7 OS=Bacillus anthracis (strain CDC 684 / NRRL 3495) GN=rpsG PE=3 SV=1 gi\|228983361, gi... - gi\|228983361\|ref\|ZP_04143574.1\| 30S ribosomal protein S7 [Bacillus thuringiensis serovar tochigiensi... gi\|228699859, gi... - gi\|229083426\|ref\|ZP_04215774.1\| 30S ribosomal protein S7 [Bacillus cereus Rock3-44], gi\|228699859\|gb... gi\|228828036, gi... - gi\|228931608\|ref\|ZP_04094514.1\| 30S ribosomal protein S7 [Bacillus thuringiensis serovar andalousien... gi\|228815745, gi... - gi\|228943912\|ref\|ZP_04106297.1\| 30S ribosomal protein S7 [Bacillus thuringiensis serovar monterrey B... gi\|229136952, gi... - gi\|229136952\|ref\|ZP_04265579.1\| 30S ribosomal protein S7 [Bacillus cereus BDRD-ST26], gi\|228646490\|g... gi\|229153884, gi... - gi\|229153884\|ref\|ZP_04282014.1\| 30S ribosomal protein S7 [Bacillus cereus ATCC 4342], gi\|228629565\|g... gi\|229089237, gi... - gi\|229089237\|ref\|ZP_04220518.1\| 30S ribosomal protein S7 [Bacillus cereus Rock3-42], gi\|228694076\|gb... gi\|229119768, gi... - gi\|229119768\|ref\|ZP_04249029.1\| 30S ribosomal protein S7 [Bacillus cereus 95/8201], gi\|228663669\|gb\|... RS7_BACAA - 30S ribosomal protein S7 OS=Bacillus anthracis (strain A0248) GN=rpsG PE=3 SV=1 gi\|254684390 - gi\|254684390\|ref\|ZP_05148250.1\| 30S ribosomal protein S7 [Bacillus anthracis str. CNEVA-9066] gi\|229182500, gi... - gi\|229182500\|ref\|ZP_04309751.1\| 30S ribosomal protein S7 [Bacillus cereus BGSC 6E1], gi\|228600955\|gb... gi\|228588962, gi... - gi\|229194496\|ref\|ZP_04321299.1\| 30S ribosomal protein S7 [Bacillus cereus m1293], gi\|228588962\|gb\|EE... gi\|254739408 - gi\|254739408\|ref\|ZP_05197108.1\| 30S ribosomal protein S7 [Bacillus anthracis str. Kruger B] gi\|254751219 - gi\|254751219\|ref\|ZP_05203257.1\| 30S ribosomal protein S7 [Bacillus anthracis str. Vollum] gi\|254720827 - gi\|254720827\|ref\|ZP_05182619.1\| 30S ribosomal protein S7 [Bacillus anthracis str. A1055] gi\|254733739 - gi\|254733739\|ref\|ZP_05191454.1\| 30S ribosomal protein S7 [Bacillus anthracis str. Western North Amer... gi\|254756818 - gi\|254756818\|ref\|ZP_05208846.1\| 30S ribosomal protein S7 [Bacillus anthracis str. Australia 94] RS7_BACHK - 30S ribosomal protein S7 OS=Bacillus thuringiensis subsp. konkukian (strain 97-27) GN=rpsG PE=3 SV=1 RS7_BACCZ - 30S ribosomal protein S7 OS=Bacillus cereus (strain ZK / E33L) GN=rpsG PE=3 SV=1 gi\|47525362, gi\|... - gi\|47525362\|ref\|YP_016711.1\| 30S ribosomal protein S7 [Bacillus anthracis str. 'Ames Ancestor'], gi\|... gi\|49183140, gi\|... - gi\|49183140\|ref\|YP_026392.1\| 30S ribosomal protein S7 [Bacillus anthracis str. Sterne], gi\|49177067\|... gi\|30253618, gi\|... - gi\|30260297\|ref\|NP_842674.1\| 30S ribosomal protein S7 [Bacillus anthracis str. Ames], gi\|30253618\|gb... RS7_BACC1 - 30S ribosomal protein S7 OS=Bacillus cereus (strain ATCC 10987 / NRS 248) GN=rpsG PE=3 SV=1 RS7_BACAN - 30S ribosomal protein S7 OS=Bacillus anthracis GN=rpsG PE=3 SV=1 RS7_BACHK - 30S ribosomal protein S7 OS=Bacillus thuringiensis subsp. konkukian GN=rpsG PE=3 SV=1	212.0	[0..1]	[156..1]
RS7_BACLD - 30S ribosomal protein S7 OS=Bacillus licheniformis (strain ATCC 14580 / DSM 13 / JCM 2505 / NBRC 122...	212.0	[0..1]	[156..1]
RS7_CHESB - 30S ribosomal protein S7 OS=Chelativorans sp. (strain BNC1) GN=rpsG PE=3 SV=1	212.0	[0..1]	[156..1]

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Predicted Domain #1

Region A:
Residues: [1-156]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPRKGSVPKR DVLPDPIHNS KLVTKLINKI MLDGKRGTAQ RILYSAFDLV EQRSGRDALE  60
   61 VFEEAINNIM PVLEVKARRV GGSNYQVPVE VRPERRTTLG LRWLVNYARL RGEKTMEDRL 120
  121 ANEILDAANN TGGAVKKRED THKMAEANKA FAHYRW

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	56.0
Match:	1husA
Description:	RIBOSOMAL PROTEIN S7
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
structural constituent of ribosome	10.1836043075256	bayes_pls_golite062009
structural molecule activity	9.60531852031349	bayes_pls_golite062009
RNA binding	2.69930050072854	bayes_pls_golite062009
nucleic acid binding	1.38138936047113	bayes_pls_golite062009
binding	0.87606732735391	bayes_pls_golite062009
protein binding	0.060050417638174	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: