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View Structure Prediction Details

Protein: BAM6_ARATH
Organism: Arabidopsis thaliana
Length: 577 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for BAM6_ARATH.

Description E-value Query
Range
Subject
Range
AMYB_MEDSA - Beta-amylase OS=Medicago sativa GN=BMY1 PE=2 SV=1
879.0 [0..67] [558..2]

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Predicted Domain #1
Region A:
Residues: [1-577]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSVLGMMNP NLINGRNLHK GSSIFVQDKE TKKRVQWRLS IKEGSLRTHQ ATASSATEPK  60
   61 ATEFNTTTYE DKMLTNYVPV YVMLQLGVIT NDNVLENEES LKKQLKKLKQ SQVDGVMVDV 120
  121 WWGIVESKGP KQYQWSAYRN LFAIVQSFGL KLQAIMSFHR CGGNIGDDVN IPIPKWVLEI 180
  181 GDSNPDIFYT NKSGNRNKEC LSLSVDNLSL FRGRTAVEMY RDYMKSFREN MEDFISSGVI 240
  241 IDIEVGLGPA GELRYPSYSE TQGWVFPGIG EFQCYDKYLR SDYEEEVRRI GHPEWKLPEN 300
  301 AGEYNSVPGE TEFFEYSNGT YLKEEGNFFL SWYSKKLLLH GDQILDEANK VFLGCKLKIA 360
  361 AKVSGIHWWY KTESHAAELT AGYYNLKNRD GYRAIAKIMR RHHAILNFTC LEMKNTEQPA 420
  421 KAKSGPQELV QQVLSSGWRE GIEVAGENAL PRFDRNGYNQ IILNARPNGV NQDGKPRMFG 480
  481 FTYLRLSDKL LNEPNFSTFK MFLKRMHANQ EYCSEPERYN HELLPLERSR NDESLEMFME 540
  541 ETEPFDPFPW LDETDMSIRP FESVLSLLRS TFLRKKS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 1000.0
Match: 1ukoA
Description: Crystal structure of soybean beta-amylase mutant substituted at surface region
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 1.32563207632796 bayes_pls_golite062009
hydrolase activity 0.85514037342026 bayes_pls_golite062009
hydrolase activity, acting on glycosyl bonds 0.80912338090552 bayes_pls_golite062009
hydrolase activity, hydrolyzing O-glycosyl compounds 0.41375210927547 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle