YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|229513911, gi...
Organism:	Vibrio cholerae TMA 21
Length:	217 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|229513911, gi....

Description	E-value	Query Range	Subject Range
gi\|11352486 - pir\|\|G83137 riboflavin synthase alpha chain PA4055 [imported] - Pseudomonas aeruginosa (strain PAO1) gi\|46164645, gi\|... - gi\|46164645\|ref\|ZP_00137498.2\| COG0307: Riboflavin synthase alpha chain [Pseudomonas aeruginosa UCBP... gi\|126168875, gi... - gi\|84319134\|ref\|ZP_00967537.1\| COG0307: Riboflavin synthase alpha chain [Pseudomonas aeruginosa C371... gi\|254242737, gi... - gi\|84325188\|ref\|ZP_00973228.1\| COG0307: Riboflavin synthase alpha chain [Pseudomonas aeruginosa 2192... gi\|9950252, gi\|1... - gi\|9950252\|gb\|AAG07442.1\|AE004822_2 riboflavin synthase alpha chain [Pseudomonas aeruginosa PAO1], g... gi\|218769887, gi... - gi\|218889664\|ref\|YP_002438528.1\| riboflavin synthase subunit alpha [Pseudomonas aeruginosa LESB58], ...	324.0	[0..1]	[216..1]
gi\|107103569 - gi\|107103569\|ref\|ZP_01367487.1\| hypothetical protein PaerPA_01004639 [Pseudomonas aeruginosa PACS2]	324.0	[0..1]	[216..1]
gi\|150959794, gi... - gi\|94417009\|ref\|ZP_01296831.1\| hypothetical protein PaerP_01001205 [Pseudomonas aeruginosa PA7], gi\|...	324.0	[0..1]	[216..1]
gi\|49078224 - gi\|49078224\|gb\|AAT49763.1\| PA4055 [synthetic construct]	324.0	[0..1]	[216..1]
gi\|70732822, gi\|... - gi\|70732822\|ref\|YP_262589.1\| riboflavin synthase subunit alpha [Pseudomonas fluorescens Pf-5], gi\|68...	319.0	[0..1]	[216..1]
gi\|48728929, gi\|... - gi\|77461239\|ref\|YP_350746.1\| riboflavin synthase subunit alpha [Pseudomonas fluorescens Pf0-1], gi\|7...	319.0	[0..1]	[216..1]
gi\|28897454, gi\|... - gi\|28897454\|ref\|NP_797059.1\| riboflavin synthase subunit alpha [Vibrio parahaemolyticus RIMD 2210633... gi\|28805666 - gi\|28805666\|dbj\|BAC58943.1\| riboflavin synthase, alpha subunit [Vibrio parahaemolyticus RIMD 2210633...	318.0	[0..1]	[217..1]
gi\|104779849, gi... - gi\|95108836\|emb\|CAK13532.1\| riboflavin synthase alpha chain [Pseudomonas entomophila L48], gi\|104779... gi\|95108836 - gi\|95108836\|emb\|CAK13532.1\| riboflavin synthase alpha chain [Pseudomonas entomophila L48]	318.0	[0..1]	[216..1]
gi\|167031577, gi... - gi\|167031577\|ref\|YP_001666808.1\| riboflavin synthase subunit alpha [Pseudomonas putida GB-1], gi\|166... gi\|26987253, gi\|... - gi\|26987253\|ref\|NP_742678.1\| riboflavin synthase subunit alpha [Pseudomonas putida KT2440], gi\|24981... gi\|82736925, gi\|... - gi\|82736925\|ref\|ZP_00899779.1\| Lumazine-binding protein [Pseudomonas putida F1], gi\|82715969\|gb\|EAP5...	317.0	[0..1]	[216..1]
gi\|67157054, gi\|... - gi\|67157054\|ref\|ZP_00418416.1\| Lumazine-binding protein [Azotobacter vinelandii AvOP], gi\|67085731\|g... gi\|53611913 - ref\|ZP_00090948.2\| COG0307: Riboflavin synthase alpha chain [Azotobacter vinelandii]	316.0	[0..1]	[216..1]

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Predicted Domain #1

Region A:
Residues: [1-217]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFTGIVEAVG KLTAIIPKGS DVTISVDVGK LDMGDVKLGD SIATNGVCLT VVAFDQRSFS  60
   61 ADLSMETLKK SGFAQYQVGD RVNLEKAMLP TTRFGGHIVS GHVDGVGEIV ERIPVGRAVD 120
  121 LWVNMPAEIS KYVAEKGSIT VDGISLTVND LRKNAFKLTI VPHTSAETTI DEFQVGRRVN 180
  181 LEVDVLARYM ERLLQGQQES EPQSRLTMAF LQQNGFA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	74.69897
Match:	1i8dA
Description:	Riboflavin synthase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
riboflavin synthase activity	5.11500941509376	bayes_pls_golite062009
catalytic activity	2.05427820269334	bayes_pls_golite062009
transferase activity	0.708491789248912	bayes_pls_golite062009
binding	0.534066059984103	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: