YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|242376003, gi...
Organism:	Escherichia coli BL21
Length:	185 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|242376003, gi....

Description	E-value	Query Range	Subject Range
RRF_ERWCT - Ribosome-recycling factor OS=Erwinia carotovora subsp. atroseptica GN=frr PE=3 SV=1 RRF_PECAS - Ribosome-recycling factor OS=Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672) GN=frr PE...	273.0	[0..1]	[185..1]
RRF_SALG2 - Ribosome-recycling factor OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=frr PE=3 SV=1 gi\|204927412, gi... - gi\|204927412\|ref\|ZP_03218614.1\| ribosome releasing factor [Salmonella enterica subsp. enterica serov... gi\|200388182, gi... - gi\|200388182\|ref\|ZP_03214794.1\| ribosome releasing factor [Salmonella enterica subsp. enterica serov... RRF_SALDC - Ribosome-recycling factor OS=Salmonella dublin (strain CT_02021853) GN=frr PE=3 SV=1 gi\|213425945 - gi\|213425945\|ref\|ZP_03358695.1\| ribosome recycling factor [Salmonella enterica subsp. enterica serov... RRF_SALTI - Ribosome-recycling factor OS=Salmonella typhi GN=frr PE=3 SV=1 gi\|213416682 - gi\|213416682\|ref\|ZP_03349826.1\| ribosome recycling factor [Salmonella enterica subsp. enterica serov... gi\|213163136 - gi\|213163136\|ref\|ZP_03348846.1\| ribosome recycling factor [Salmonella enterica subsp. enterica serov... RRF_SALEP - Ribosome-recycling factor OS=Salmonella enteritidis PT4 (strain P125109) GN=frr PE=3 SV=1 gi\|16759209 - gi\|16759209\|ref\|NP_454826.1\| ribosome recycling factor [Salmonella enterica subsp. enterica serovar ... RRF_SALHS - Ribosome-recycling factor OS=Salmonella heidelberg (strain SL476) GN=frr PE=3 SV=1 RRF_SALNS - Ribosome-recycling factor OS=Salmonella newport (strain SL254) GN=frr PE=3 SV=1 RRF_SALTY - Ribosome-recycling factor OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=frr PE=... gi\|168823247, gi... - gi\|205340485\|gb\|EDZ27249.1\| ribosome releasing factor [Salmonella enterica subsp. enterica serovar W... gi\|29136383, gi\|... - gi\|29140759\|ref\|NP_804101.1\| ribosome recycling factor [Salmonella enterica subsp. enterica serovar ... gi\|195632657, gi... - gi\|195632657\|gb\|EDX51111.1\| ribosome releasing factor [Salmonella enterica subsp. enterica serovar N... gi\|197240067, gi... - gi\|197261812\|ref\|ZP_03161886.1\| ribosome releasing factor [Salmonella enterica subsp. enterica serov... RRF_SALA4 - Ribosome-recycling factor OS=Salmonella agona (strain SL483) GN=frr PE=3 SV=1 RRF_SALSV - Ribosome-recycling factor OS=Salmonella schwarzengrund (strain CVM19633) GN=frr PE=3 SV=1 gi\|194457134, gi... - gi\|194470770\|ref\|ZP_03076754.1\| ribosome releasing factor [Salmonella enterica subsp. enterica serov... RRF_SALCH - Ribosome-recycling factor OS=Salmonella choleraesuis GN=frr PE=3 SV=1 RRF_SALPC - Ribosome-recycling factor OS=Salmonella paratyphi C (strain RKS4594) GN=frr PE=3 SV=1 RRF_SALTY - Ribosome-recycling factor OS=Salmonella typhimurium GN=frr PE=3 SV=1 RRF_SALTI - Ribosome-recycling factor OS=Salmonella typhi GN=frr PE=3 SV=1 gi\|214000838 - gi\|214000838\|ref\|ZP_03411573.1\| ribosome recycling factor [Salmonella enterica subsp. enterica serov... RRF_SALTY - Ribosome-recycling factor OS=Salmonella typhimurium GN=frr PE=3 SV=1 gi\|213646665 - gi\|213646665\|ref\|ZP_03376718.1\| ribosome recycling factor [Salmonella enterica subsp. enterica serov... gi\|213580802 - gi\|213580802\|ref\|ZP_03362628.1\| ribosome recycling factor [Salmonella enterica subsp. enterica serov... lcl\|NC_016856.1_... - [gene=frr] [protein=ribosome recycling factor] [protein_id=YP_005235890.1] [location=257853..258410] RRF_SALPB - Ribosome-recycling factor OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=frr PE=3 SV=1 RRF_SALAR - Ribosome-recycling factor OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=frr ... RRF_SALCH - Ribosome-recycling factor OS=Salmonella choleraesuis GN=frr PE=3 SV=1 gi\|205331572, gi... - gi\|205331572\|gb\|EDZ18336.1\| ribosome releasing factor [Salmonella enterica subsp. enterica serovar 4... gi\|205322189, gi... - gi\|205322189\|gb\|EDZ10028.1\| ribosome releasing factor [Salmonella enterica subsp. enterica serovar S... gi\|168263914, gi... - gi\|205347503\|gb\|EDZ34134.1\| ribosome releasing factor [Salmonella enterica subsp. enterica serovar H... gi\|205336212, gi... - gi\|205336212\|gb\|EDZ22976.1\| ribosome releasing factor [Salmonella enterica subsp. enterica serovar H... gi\|168234997, gi... - gi\|197291879\|gb\|EDY31229.1\| ribosome releasing factor [Salmonella enterica subsp. enterica serovar S... gi\|168230526, gi... - gi\|205335095\|gb\|EDZ21859.1\| ribosome releasing factor [Salmonella enterica subsp. enterica serovar K... RRF_SALCH - Ribosome-recycling factor OS=Salmonella choleraesuis (strain SC-B67) GN=frr PE=3 SV=1 gi\|238911285 - gi\|238911285\|ref\|ZP_04655122.1\| ribosome recycling factor [Salmonella enterica subsp. enterica serov... RRF_SALPB - Ribosome-recycling factor OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=frr PE=3 SV=1	268.0	[0..1]	[185..1]
RRF_PHOLL - Ribosome-recycling factor OS=Photorhabdus luminescens subsp. laumondii GN=frr PE=3 SV=1 RRF_PHOLL - Ribosome-recycling factor OS=Photorhabdus luminescens subsp. laumondii (strain DSM 15139 / CIP 10556...	267.0	[0..1]	[185..1]
RRF_YERPG - Ribosome-recycling factor OS=Yersinia pestis bv. Antiqua (strain Angola) GN=frr PE=3 SV=1 RRF_YERP3 - Ribosome-recycling factor OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=frr PE=3... gi\|45442572, gi\|... - gi\|45442572\|ref\|NP_994111.1\| ribosome recycling factor [Yersinia pestis biovar Microtus str. 91001],... gi\|22127009, gi\|... - gi\|22127009\|ref\|NP_670432.1\| ribosome recycling factor [Yersinia pestis KIM], gi\|21960056\|gb\|AAM8668... gi\|15979114, gi\|... - gi\|218928215\|ref\|YP_002346090.1\| ribosome recycling factor [Yersinia pestis CO92], gi\|16121347\|ref\|N... gi\|229843077, gi... - gi\|229843077\|ref\|ZP_04463227.1\| ribosome recycling factor [Yersinia pestis biovar Orientalis str. In... RRF_YERPS - Ribosome-recycling factor OS=Yersinia pseudotuberculosis serotype I (strain IP32953) GN=frr PE=3 SV=... gi\|229840976, gi... - gi\|229840976\|ref\|ZP_04461135.1\| ribosome recycling factor [Yersinia pestis biovar Orientalis str. PE... gi\|229837754, gi... - gi\|229837754\|ref\|ZP_04457914.1\| ribosome recycling factor [Yersinia pestis Pestoides A], gi\|22970413... gi\|89105137, gi\|... - gi\|89105137\|ref\|ZP_01177662.1\| COG0233: Ribosome recycling factor [Yersinia pestis biovar Orientalis... RRF_YERPS - Ribosome-recycling factor OS=Yersinia pseudotuberculosis GN=frr PE=3 SV=1 RRF_YERPA - Ribosome-recycling factor OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=frr PE=3 SV=1 RRF_YERPN - Ribosome-recycling factor OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=frr PE=3 SV=1 gi\|166011931, gi... - gi\|166011931\|ref\|ZP_02232829.1\| ribosome recycling factor [Yersinia pestis biovar Antiqua str. E1979... gi\|166211643, gi... - gi\|166211643\|ref\|ZP_02237678.1\| ribosome recycling factor [Yersinia pestis biovar Antiqua str. B4200... gi\|167399872, gi... - gi\|167399872\|ref\|ZP_02305390.1\| ribosome recycling factor [Yersinia pestis biovar Antiqua str. UG05-... gi\|167419665, gi... - gi\|167419665\|ref\|ZP_02311418.1\| ribosome recycling factor [Yersinia pestis biovar Orientalis str. MG... RRF_YERPP - Ribosome-recycling factor OS=Yersinia pestis (strain Pestoides F) GN=frr PE=3 SV=1 gi\|167055636, gi... - gi\|167425236\|ref\|ZP_02316989.1\| ribosome recycling factor [Yersinia pestis biovar Mediaevalis str. K... RRF_YERPE - Ribosome-recycling factor OS=Yersinia pestis GN=frr PE=3 SV=1 gi\|149366952, gi... - gi\|149366952\|ref\|ZP_01888985.1\| ribosome recycling factor [Yersinia pestis CA88-4125], gi\|149290566\|... gi\|167470429 - gi\|167470429\|ref\|ZP_02335133.1\| ribosome recycling factor [Yersinia pestis FV-1] RRF_YERPY - Ribosome-recycling factor OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=frr PE=3 SV=... RRF_YERPB - Ribosome-recycling factor OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=frr PE=3 SV=1 gi\|165920967, gi... - gi\|165927071\|ref\|ZP_02222903.1\| ribosome recycling factor [Yersinia pestis biovar Orientalis str. F1...	266.0	[0..1]	[185..1]
gi\|37926485 - gi\|37926485\|pdb\|1ISE\|A Chain A, Crystal Structure Of A Mutant Of Ribosome Recycling Factor From Esch...	265.0	[0..1]	[185..1]
RRF_LEGPA - Ribosome-recycling factor OS=Legionella pneumophila (strain Paris) GN=frr PE=3 SV=1	265.0	[0..1]	[184..1]
RRF_LEGPL - Ribosome-recycling factor OS=Legionella pneumophila (strain Lens) GN=frr PE=3 SV=1 RRF_LEGPC - Ribosome-recycling factor OS=Legionella pneumophila (strain Corby) GN=frr PE=3 SV=1 RRF_LEGPH - Ribosome-recycling factor OS=Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC...	264.0	[0..1]	[184..1]
RRF_SALPK - Ribosome-recycling factor OS=Salmonella paratyphi A (strain AKU_12601) GN=frr PE=3 SV=1 RRF_SALPA - Ribosome-recycling factor OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42) GN=frr PE=3 SV=1 RRF_SALPA - Ribosome-recycling factor OS=Salmonella paratyphi A GN=frr PE=3 SV=1	264.0	[0..1]	[185..1]
RRF_COLP3 - Ribosome-recycling factor OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=frr PE=3 SV=1	264.0	[0..1]	[184..1]
RRF_HISS2 - Ribosome-recycling factor OS=Histophilus somni (strain 2336) GN=frr PE=3 SV=1 RRF_HAES1 - Ribosome-recycling factor OS=Haemophilus somnus (strain 129Pt) GN=frr PE=3 SV=1	264.0	[0..1]	[185..1]

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Predicted Domain #1

Region A:
Residues: [1-185]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MISDIRKDAE VRMDKCVEAF KTQISKIRTG RASPSLLDGI VVEYYGTPTP LRQLASVTVE  60
   61 DSRTLKINVF DRSMSPAVEK AIMASDLGLN PNSAGSDIRV PLPPLTEERR KDLTKIVRGE 120
  121 AEQARVAVRN VRRDANDKVK ALLKDKEISE DDDRRSQDDV QKLTDAAIKK IEAALADKEA 180
  181 ELMQF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	72.09691
Match:	1ek8A
Description:	Ribosome recycling factor, RRF
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
translation regulator activity	4.3587179630028	bayes_pls_golite062009
translation factor activity, nucleic acid binding	4.16037247039451	bayes_pls_golite062009
nucleic acid binding	3.79085926340206	bayes_pls_golite062009
binding	2.89152455528061	bayes_pls_golite062009
translation termination factor activity	2.10810503428749	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: