YRC Public Data Repository - Protein Structure Prediction

Protein:	ATG12_PONPY
Organism:	Pongo pygmaeus
Length:	140 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ATG12_PONPY.

Description	E-value	Query Range	Subject Range
gi\|119569340, gi... - gi\|52632420\|gb\|AAH12266.2\| ATG12 autophagy related 12 homolog (S. cerevisiae) [Homo sapiens], gi\|382...	164.0	[0..1]	[140..48]
gi\|74272675 - gi\|74272675\|gb\|ABA01133.1\| microtubule-associated protein-related protein [Chlamydomonas incerta]	162.0	[0..22]	[140..1]
ATG8F_ARATH - Autophagy-related protein 8f OS=Arabidopsis thaliana GN=ATG8F PE=1 SV=1	161.0	[0..25]	[140..1]
gi\|25989541 - gi\|25989541\|gb\|AAM77034.1\| polyprotein [Bovine viral diarrhea virus-1]	161.0	[0..27]	[140..186]
gi\|34784077 - gi\|34784077\|gb\|AAH56701.1\| Gabarap protein [Danio rerio]	161.0	[0..20]	[140..18]
gi\|2072023 - gi\|2072023\|gb\|AAB53650.1\| symbiosis-related protein [Laccaria bicolor]	160.0	[0..20]	[140..7]
gi\|73970487 - gi\|73970487\|ref\|XP_531866.2\| PREDICTED: similar to Autophagy protein 12-like (APG12-like) (ATG12) is...	160.0	[0..1]	[140..1]
gi\|92872102 - gi\|92872102\|gb\|ABE80903.1\| Light chain 3 (LC3) [Medicago truncatula]	160.0	[0..25]	[140..1]

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Predicted Domain #1

Region A:
Residues: [1-140]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEEPQTVLQ LPPSSAAGGE GLTDVSPETT TPEPPSSAAV SPGTEEPAGD TKKKIDILLK  60
   61 AVGDTPIMKT KKWAVERTRT IQGPIDFIKK FLKLVASEQL FIYVNQSFAP SPDQEVGTLY 120
  121 ECFGSDGKLV LHYCKSQAWG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	39.154902
Match:	1kotA
Description:	GABA(A) receptor associated protein GABARAP
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
protein binding	2.0758030814092	bayes_pls_golite062009
binding	1.99888689497846	bayes_pls_golite062009
signal transducer activity	0.42641360047524	bayes_pls_golite062009
molecular transducer activity	0.42641360047524	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: