YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|229521650, gi...
Organism:	Vibrio cholerae TM 11079-80
Length:	179 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|229521650, gi....

Description	E-value	Query Range	Subject Range
RL5_SODGM - 50S ribosomal protein L5 OS=Sodalis glossinidius (strain morsitans) GN=rplE PE=3 SV=1	283.0	[0..1]	[179..1]
RL5_ERWCT - 50S ribosomal protein L5 OS=Erwinia carotovora subsp. atroseptica GN=rplE PE=3 SV=1 RL5_PECAS - 50S ribosomal protein L5 OS=Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672) GN=rplE PE...	283.0	[0..1]	[179..1]
RL5_VIBTL - 50S ribosomal protein L5 OS=Vibrio tasmaniensis (strain LGP32) GN=rplE PE=3 SV=1 gi\|84374798, gi\|... - gi\|84394578\|ref\|ZP_00993282.1\| 50S ribosomal protein L5 [Vibrio splendidus 12B01], gi\|84374798\|gb\|EA... gi\|85833407, gi\|... - gi\|86148817\|ref\|ZP_01067084.1\| 50S ribosomal protein L5 [Vibrio sp. MED222], gi\|85833407\|gb\|EAQ51598...	281.0	[0..1]	[179..1]
RL5_MANSM - 50S ribosomal protein L5 OS=Mannheimia succiniciproducens (strain MBEL55E) GN=rplE PE=3 SV=1	280.0	[0..1]	[179..1]
gi\|91228960, gi\|... - gi\|91228960\|ref\|ZP_01262855.1\| 50S ribosomal protein L5 [Vibrio alginolyticus 12G01], gi\|91187480\|gb...	280.0	[0..1]	[179..1]
RL5_SALCH - 50S ribosomal protein L5 OS=Salmonella choleraesuis GN=rplE PE=3 SV=1 RL5_SALTY - 50S ribosomal protein L5 OS=Salmonella typhimurium GN=rplE PE=3 SV=2 RL5_SALNS - 50S ribosomal protein L5 OS=Salmonella newport (strain SL254) GN=rplE PE=3 SV=1 RL5_SALCH - 50S ribosomal protein L5 OS=Salmonella choleraesuis (strain SC-B67) GN=rplE PE=3 SV=1 RL5_SALHS - 50S ribosomal protein L5 OS=Salmonella heidelberg (strain SL476) GN=rplE PE=3 SV=1 RL5_SALPA - 50S ribosomal protein L5 OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42) GN=rplE PE=3 SV=1 gi\|194471288, gi... - gi\|194471288\|ref\|ZP_03077272.1\| ribosomal protein L5 [Salmonella enterica subsp. enterica serovar Ke... RL5_SALSV - 50S ribosomal protein L5 OS=Salmonella schwarzengrund (strain CVM19633) GN=rplE PE=3 SV=1 gi\|168264689, gi... - gi\|205346893\|gb\|EDZ33524.1\| ribosomal protein L5 [Salmonella enterica subsp. enterica serovar Hadar ... RL5_SALPB - 50S ribosomal protein L5 OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=rplE PE=3 SV=1 gi\|195628881, gi... - gi\|195628881\|gb\|EDX48291.1\| ribosomal protein L5 [Salmonella enterica subsp. enterica serovar Newpor... RL5_SALTY - 50S ribosomal protein L5 OS=Salmonella typhimurium GN=rplE PE=3 SV=2 RL5_SALTI - 50S ribosomal protein L5 OS=Salmonella typhi GN=rplE PE=3 SV=2 RL5_SALCH - 50S ribosomal protein L5 OS=Salmonella choleraesuis GN=rplE PE=3 SV=1 RL5_SALPA - 50S ribosomal protein L5 OS=Salmonella paratyphi A GN=rplE PE=3 SV=1 RL5_SALTI - 50S ribosomal protein L5 OS=Salmonella typhi GN=rplE PE=3 SV=2 gi\|16762855 - gi\|16762855\|ref\|NP_458472.1\| 50S ribosomal protein L5 [Salmonella enterica subsp. enterica serovar T... RL5_SALTY - 50S ribosomal protein L5 OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=rplE PE=... gi\|29139980, gi\|... - gi\|29144342\|ref\|NP_807684.1\| 50S ribosomal protein L5 [Salmonella enterica subsp. enterica serovar T... gi\|213646536 - gi\|213646536\|ref\|ZP_03376589.1\| 50S ribosomal protein L5 [Salmonella enterica subsp. enterica serova... gi\|213852172 - gi\|213852172\|ref\|ZP_03381704.1\| 50S ribosomal protein L5 [Salmonella enterica subsp. enterica serova... gi\|213999772 - gi\|213999772\|ref\|ZP_03410507.1\| 50S ribosomal protein L5 [Salmonella enterica subsp. enterica serova... RL5_SALPC - 50S ribosomal protein L5 OS=Salmonella paratyphi C (strain RKS4594) GN=rplE PE=3 SV=1 gi\|213418134 - gi\|213418134\|ref\|ZP_03351200.1\| 50S ribosomal protein L5 [Salmonella enterica subsp. enterica serova... gi\|213425763 - gi\|213425763\|ref\|ZP_03358513.1\| 50S ribosomal protein L5 [Salmonella enterica subsp. enterica serova... gi\|213581220 - gi\|213581220\|ref\|ZP_03363046.1\| 50S ribosomal protein L5 [Salmonella enterica subsp. enterica serova... gi\|213612421 - gi\|213612421\|ref\|ZP_03370247.1\| 50S ribosomal protein L5 [Salmonella enterica subsp. enterica serova... gi\|200389086, gi... - gi\|200389086\|ref\|ZP_03215698.1\| ribosomal protein L5 [Salmonella enterica subsp. enterica serovar Vi... RL5_SALG2 - 50S ribosomal protein L5 OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=rplE PE=3 SV=1 RL5_SALEP - 50S ribosomal protein L5 OS=Salmonella enteritidis PT4 (strain P125109) GN=rplE PE=3 SV=1 gi\|209900872, gi... - gi\|209905804\|ref\|ZP_03280288.1\| hypothetical protein ENTCAN_00029 [Enterobacter cancerogenus ATCC 35... RL5_SALA4 - 50S ribosomal protein L5 OS=Salmonella agona (strain SL483) GN=rplE PE=3 SV=1 gi\|197242849, gi... - gi\|197264594\|ref\|ZP_03164668.1\| ribosomal protein L5 [Salmonella enterica subsp. enterica serovar Sa... RL5_SALPK - 50S ribosomal protein L5 OS=Salmonella paratyphi A (strain AKU_12601) GN=rplE PE=3 SV=1 RL5_SALDC - 50S ribosomal protein L5 OS=Salmonella dublin (strain CT_02021853) GN=rplE PE=3 SV=1 gi\|283788056\|ref... - 50S ribosomal subunit protein L5 [Citrobacter rodentium ICC168] RL5_SALPB - 50S ribosomal protein L5 OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=rplE PE=3 SV=1 gi\|238913857 - gi\|238913857\|ref\|ZP_04657694.1\| 50S ribosomal protein L5 [Salmonella enterica subsp. enterica serova... lcl\|NC_016856.1_... - [gene=rplE] [protein=50S ribosomal protein L5] [protein_id=YP_005239618.1] [location=complement(3604...	279.0	[0..1]	[179..1]
RL5_VIBPA - 50S ribosomal protein L5 OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) GN=rplE PE=... gi\|153840285, gi... - gi\|153840285\|ref\|ZP_01992952.1\| 50S ribosomal protein L5 [Vibrio parahaemolyticus AQ3810], gi\|149746... RL5_VIBPA - 50S ribosomal protein L5 OS=Vibrio parahaemolyticus GN=rplE PE=3 SV=1	279.0	[0..1]	[179..1]
RL5_HAEI8 - 50S ribosomal protein L5 OS=Haemophilus influenzae (strain 86-028NP) GN=rplE PE=3 SV=1 RL5_HAEIG - 50S ribosomal protein L5 OS=Haemophilus influenzae (strain PittGG) GN=rplE PE=3 SV=1 RL5_HAEIE - 50S ribosomal protein L5 OS=Haemophilus influenzae (strain PittEE) GN=rplE PE=3 SV=1 gi\|144983926, gi... - gi\|145640887\|ref\|ZP_01796469.1\| 50S ribosomal protein L5 [Haemophilus influenzae R3021], gi\|14498392... gi\|145638409, gi... - gi\|145638409\|ref\|ZP_01794019.1\| 50S ribosomal protein L5 [Haemophilus influenzae PittII], gi\|1452727... gi\|145270178, gi... - gi\|145636652\|ref\|ZP_01792319.1\| 50S ribosomal protein L5 [Haemophilus influenzae PittHH], gi\|1452701... gi\|229844657, gi... - gi\|229844657\|ref\|ZP_04464796.1\| 50S ribosomal protein L5 [Haemophilus influenzae 6P18H1], gi\|2298123... gi\|229845840, gi... - gi\|229845840\|ref\|ZP_04465952.1\| 50S ribosomal protein L5 [Haemophilus influenzae 7P49H1], gi\|2298108... RL5_HAEIN - 50S ribosomal protein L5 OS=Haemophilus influenzae GN=rplE PE=3 SV=2 gi\|46129210 - gi\|46129210\|ref\|ZP_00155926.2\| COG0094: Ribosomal protein L5 [Haemophilus influenzae R2846] gi\|145267965, gi... - gi\|145634799\|ref\|ZP_01790507.1\| 50S ribosomal protein L5 [Haemophilus influenzae PittAA], gi\|1452679... gi\|46133135 - gi\|46133135\|ref\|ZP_00156645.2\| COG0094: Ribosomal protein L5 [Haemophilus influenzae R2866] gi\|144987055, gi... - gi\|145632148\|ref\|ZP_01787883.1\| 50S ribosomal protein L5 [Haemophilus influenzae 3655], gi\|144987055... RL5_HAEIN - 50S ribosomal protein L5 OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=rp... gi\|145274401, gi... - gi\|145640887\|ref\|ZP_01796469.1\| 50S ribosomal protein L5 [Haemophilus influenzae R3021], gi\|14563053... gi\|144980093, gi... - gi\|145628318\|ref\|ZP_01784119.1\| 50S ribosomal protein L5 [Haemophilus influenzae 22.1-21], gi\|144980...	278.0	[0..1]	[179..1]
RL5_HAES1 - 50S ribosomal protein L5 OS=Haemophilus somnus (strain 129Pt) GN=rplE PE=3 SV=1 RL5_HISS2 - 50S ribosomal protein L5 OS=Histophilus somni (strain 2336) GN=rplE PE=3 SV=1	278.0	[0..1]	[179..1]
RL5_PASMU - 50S ribosomal protein L5 OS=Pasteurella multocida (strain Pm70) GN=rplE PE=3 SV=1 RL5_PASMU - 50S ribosomal protein L5 OS=Pasteurella multocida GN=rplE PE=3 SV=1	278.0	[0..1]	[179..1]

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Predicted Domain #1

Region A:
Residues: [1-179]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKLHDYYKS SVVAELTKQF SYTSVMQVPR IEKITLNMGV GEAINDKKLL ENAASDMAII  60
   61 SGQKPLITKA RKSVAGFKIR EGYPIGCKVT LRGERMWDFL ERLISIALPR VRDFRGVNGK 120
  121 SFDGRGNYSM GVREQIIFPE IDYDKVDRVR GLDITITTTA GTDEEGRALL AAFNFPFRK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	70.221849
Match:	1vs6F
Description:	No description for 1vs6F was found.

Predicted functions:

Term	Confidence	Notes
structural constituent of ribosome	10.0077098174023	bayes_pls_golite062009
structural molecule activity	9.43117206427219	bayes_pls_golite062009
binding	1.22985833191636	bayes_pls_golite062009
protein binding	0.551360246680731	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: