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View Structure Prediction Details

Protein: gi|255098156
Organism: Mycobacterium tuberculosis KZN 605
Length: 238 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|255098156.

Description E-value Query
Range
Subject
Range
gi|254776958 - gi|254776958|ref|ZP_05218474.1| transcription antitermination protein NusG [Mycobacterium avium subs...
gi|41410209, gi|... - gi|41410209|ref|NP_963045.1| transcription antitermination protein NusG [Mycobacterium avium subsp. ...
gi|118167394, gi... - gi|118466107|ref|YP_883656.1| transcription antitermination protein NusG [Mycobacterium avium 104], ...
252.0 [0..1] [238..1]
gi|221230497, gi... - gi|221230497|ref|YP_002503913.1| transcription antitermination protein nusG [Mycobacterium leprae Br...
NUSG_MYCLE - Transcription antitermination protein nusG OS=Mycobacterium leprae GN=nusG PE=3 SV=1
NUSG_MYCLE - Transcription termination/antitermination protein NusG OS=Mycobacterium leprae (strain TN) GN=nusG P...
249.0 [0..17] [238..7]
gi|89338459, gi|... - gi|89338459|ref|ZP_01191224.1| transcription antitermination protein NusG:KOW [Mycobacterium flavesc...
239.0 [0..5] [238..34]
gi|110818507, gi... - gi|111018977|ref|YP_701949.1| transcription antitermination protein NusG [Rhodococcus jostii RHA1], ...
235.0 [0..5] [238..31]
gi|92913607, gi|... - gi|92913607|ref|ZP_01282235.1| transcription antitermination protein NusG:KOW [Mycobacterium sp. KMS...
gi|108797896, gi... - gi|108797896|ref|YP_638093.1| transcription antitermination protein NusG [Mycobacterium sp. MCS], gi...
230.0 [0..3] [238..33]
gi|54027090, gi|... - gi|54027090|ref|YP_121332.1| transcription antitermination protein NusG [Nocardia farcinica IFM 1015...
230.0 [0..4] [238..38]
gi|69284922, gi|... - gi|69284922|ref|ZP_00616621.1| transcription antitermination protein NusG [Kineococcus radiotolerans...
229.0 [0..3] [238..243]
gi|48835068 - ref|ZP_00292070.1| COG0250: Transcription antiterminator [Thermobifida fusca]
gi|72163058, gi|... - gi|72163058|ref|YP_290715.1| transcription antitermination protein NusG [Thermobifida fusca YX], gi|...
227.0 [0..20] [238..43]
gi|90202745, gi|... - gi|90202745|ref|ZP_01205391.1| transcription antitermination protein NusG:KOW [Mycobacterium vanbaal...
227.0 [0..4] [238..30]
gi|98660440 - gi|98660440|dbj|GAA02282.1| unnamed protein product [Pelotomaculum thermopropionicum SI]
226.0 [0..45] [238..4]

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Predicted Domain #1
Region A:
Residues: [1-103]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTFDGDTSA GEAVDLTEAN AFQDAAAPAE EVDPAAALKA ELRSKPGDWY VVHSYAGYEN  60
   61 KVKANLETRV QNLDVGDYIF QVEVPTEEVT EIKNGQRKQV NRK

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 3.41
Match: 1m1gA
Description: N-utilization substance G protein NusG, insert domain; N-utilization substance G protein NusG, C-terminal domain; N-utilization substance G protein NusG, N-terminal domain
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [104-238]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VLPGYILVRM DLTDDSWAAV RNTPGVTGFV GATSRPSALA LDDVVKFLLP RGSTRKAAKG  60
   61 AASTAAAAEA GGLERPVVEV DYEVGESVTV MDGPFATLPA TISEVNAEQQ KLKVLVSIFG 120
  121 RETPVELTFG QVSKI

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 28.0
Match: 1m1gA
Description: N-utilization substance G protein NusG, insert domain; N-utilization substance G protein NusG, C-terminal domain; N-utilization substance G protein NusG, N-terminal domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
transcription termination factor activity 7.3828495299519 bayes_pls_golite062009
transcription regulator activity 3.63525538465601 bayes_pls_golite062009
structural constituent of ribosome 2.40236111142017 bayes_pls_golite062009
structural molecule activity 2.11748533169546 bayes_pls_golite062009
nucleic acid binding 0.761013355804059 bayes_pls_golite062009
binding 0.302568764609847 bayes_pls_golite062009
DNA binding 0.302556727687398 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle