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View Structure Prediction Details

Protein: RL19_PHOLL
Organism: Photorhabdus luminescens subsp. laumondii TTO1
Length: 117 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RL19_PHOLL.

Description E-value Query
Range
Subject
Range
gi|87282734, gi|... - gi|87302851|ref|ZP_01085662.1| 50S ribosomal protein L19 [Synechococcus sp. WH 5701], gi|87282734|gb...
177.0 [0..2] [116..57]

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Predicted Domain #1
Region A:
Residues: [1-117]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNIIKQLEQ EQMKQDVPSF RPGDSVEVKV WVVEGAKKRL QAFEGVVIAI RNRGLHSAFT  60
   61 VRKVSNGEGV ERVFQTHSPV VDSINVKRRG AVRRAKLYYL RERSGKAARI KERLNSK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 43.154902
Match: 1vs6P
Description: No description for 1vs6P was found.

Predicted functions:

Term Confidence Notes
structural constituent of ribosome 9.75663213016935 bayes_pls_golite062009
structural molecule activity 9.17485893013108 bayes_pls_golite062009
RNA binding 1.4457902513736 bayes_pls_golite062009
binding 1.06497983674709 bayes_pls_golite062009
nucleic acid binding 0.694156012779703 bayes_pls_golite062009
transcription regulator activity 0.531244221462633 bayes_pls_golite062009
protein binding 0.403456843184132 bayes_pls_golite062009
translation regulator activity 0.20179424040045 bayes_pls_golite062009
translation factor activity, nucleic acid binding 0.177099375659271 bayes_pls_golite062009
DNA binding 0.119656223173058 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle