YRC Public Data Repository - Protein Structure Prediction

Protein:	H2A_CAIMO
Organism:	Cairina moschata
Length:	129 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for H2A_CAIMO.

Description	E-value	Query Range	Subject Range
gi\|68432331 - gi\|68432331\|ref\|XP_690287.1\| PREDICTED: similar to ReO_6 [Danio rerio]	191.0	[0..1]	[127..288]
gi\|50728596 - gi\|50728596\|ref\|XP_416195.1\| PREDICTED: similar to histone 2, H2ac [Gallus gallus]	184.0	[0..1]	[129..222]
gi\|73981533 - gi\|73981533\|ref\|XP_540292.2\| PREDICTED: similar to histone 2, H2ac [Canis familiaris]	176.0	[0..1]	[129..20]

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Predicted Domain #1

Region A:
Residues: [1-129]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGRGKQGGK ARAKAKSRSS RAGLQFPVGR VHRLLRKGNY AERVGAGAPV YLAAVLEYLT  60
   61 AEILELAGNA ARDNKKTRII PRHLQLAIRN DEELNKLLGK VTIAQGGVLP NIQAVLLPKK 120
  121 TDSHKAKSK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	43.0
Match:	1eqzA
Description:	Histone H2A
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.581886805340955	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: