YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: MSRB9_ARATH
Organism: Arabidopsis thaliana
Length: 143 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MSRB9_ARATH.

Description E-value Query
Range
Subject
Range
gi|92877819 - gi|92877819|gb|ABE84787.1| Mss4-like [Medicago truncatula]
236.0 [0..5] [142..51]

Back

Predicted Domain #1
Region A:
Residues: [1-143]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPTSATAVAP STGSVQKKDQ DWRAILSPEQ FRVLREKGTE NRGKGEYTKL FDDGIYSCAG  60
   61 CATPLYKSTT KFDSGCGWPS FFDAIPGAIK QTPEAGGRRM EITCAACDGH LGHVVKGEGF 120
  121 PTATDERHCV NSVSLKFSEI SSQ

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 53.39794
Match: 1l1dA
Description: C-terminal MsrB domain of peptide methionine sulfoxide reductase PilB
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
oxidoreductase activity, acting on sulfur group of donors, disulfide as acceptor 5.90194589149201 bayes_pls_golite062009
protein-methionine-R-oxide reductase activity 5.64196103816384 bayes_pls_golite062009
oxidoreductase activity, acting on sulfur group of donors 3.02342037380774 bayes_pls_golite062009
peptide-methionine-(S)-S-oxide reductase activity 1.80676476343543 bayes_pls_golite062009
binding 1.67290562818139 bayes_pls_golite062009
catalytic activity 0.566791077255496 bayes_pls_golite062009
nucleic acid binding 0.555078494441175 bayes_pls_golite062009
ion binding 0.415760364192452 bayes_pls_golite062009
cation binding 0.404651661251597 bayes_pls_golite062009
metal ion binding 0.404651661251597 bayes_pls_golite062009
DNA binding 0.215568693193579 bayes_pls_golite062009
transcription regulator activity 0.183261590647643 bayes_pls_golite062009
protein binding 0.0755837372617499 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle