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View Structure Prediction Details

Protein: SMT3B_ARATH
Organism: Arabidopsis thaliana
Length: 359 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SMT3B_ARATH.

Description E-value Query
Range
Subject
Range
gi|1061040, gi|1... - gi|1587694|prf||2207220A sterol C-methyltransferase, gi|1061040|emb|CAA61966.1| sterol-C-methyltrans...
284.0 [0..1] [359..1]

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Predicted Domain #1
Region A:
Residues: [1-359]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSVALYCTA GLIAGAVYWF ICVLGPAERK GKRASDLSGG SISAEKVKDN YNQYWSFFRK  60
   61 PKEIESAEKV PDFVDTFYNL VTDIYEWGWG QSFHFSPHVP GKSDKDATRI HEEMAVDLIK 120
  121 VKPGQKILDA GCGVGGPMRA IAAHSKAQVT GITINEYQVQ RAKLHNKKAG LDSLCNVVCG 180
  181 NFLKMPFDEN TFDGAYSIEA TCHAPKLEEV YSEIFRVMKP GSLFVSYEWV TTEKYRDDDE 240
  241 EHKDVIQGIE RGDALPGLRS YADIAVTAKK VGFEVVKEKD LAKPPSKPWW NRLKMGRIAY 300
  301 WRNHVVVVIL SAIGVAPKGT VDVHKMLFKT ADYLTRGGET GIFSPMHMIL CRKPEKASE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 43.0
Match: 1kp9A
Description: CmaA1
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 1.25333584501255 bayes_pls_golite062009
transferase activity 1.07321114919891 bayes_pls_golite062009
transferase activity, transferring one-carbon groups 0.644010137949015 bayes_pls_golite062009
methyltransferase activity 0.635463629299812 bayes_pls_golite062009
binding 0.422181371325275 bayes_pls_golite062009
S-adenosylmethionine-dependent methyltransferase activity 0.181420092548185 bayes_pls_golite062009
DNA binding 0.00720144044916005 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle