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View Structure Prediction Details

Protein: SWI3B_ARATH
Organism: Arabidopsis thaliana
Length: 469 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SWI3B_ARATH.

Description E-value Query
Range
Subject
Range
gi|88180462, gi|... - gi|88180462|gb|EAQ87930.1| hypothetical protein CHGG_04549 [Chaetomium globosum CBS 148.51], gi|1161...
330.0 [0..5] [462..67]

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Predicted Domain #1
Region A:
Residues: [1-469]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAMKAPDPGG SGEILPSTPS LSETTSGGAA AASKSAQLPS SSSDIDNIHV PSYSSWFSWT  60
   61 DINDCEVRSL PEFFDSRSSS KNPKFYLYLR NSIIKQYRDD HPRKISFTDV RRTLVSDVVS 120
  121 IRRVFDFLDS WGLINYNSSA SAKPLKWEEK EAGKSAGDAA SEPATTVKET AKRNCNGCKA 180
  181 ICSIACFACD KYDLTLCARC YVRSNYRVGI NSSEFKRVEI SEESKPEWSD KEILLLLEAV 240
  241 MHYGDDWKKV ASHVIGRTEK DCVSQFVKLP FGEQFVKESD SEDGLEMFDQ IKDSDIPESE 300
  301 GIDKDGSSPN KRIKLTPLAD ASNPIMAQAA FLSALAGTNV AEAAARAAVR ALSDVDYEAD 360
  361 KNASRDPNRQ DANAASSGET TRNESERAWA DAKSLIEKEE HEVEGAIKET VEVEMKKIRD 420
  421 RIVHFEKLDL EMERSRKQLE EVRNLLFVDQ LNIFFHTRKA RKTEDRIEC

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 42.0
Match: 2iw5A
Description: No description for 2iw5A was found.

Predicted functions:

Term Confidence Notes
binding 0.334577365229545 bayes_pls_golite062009
transcription regulator activity 0.0696342306231097 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle