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View Structure Prediction Details

Protein: gi|18406673, gi|...
Organism: Arabidopsis thaliana
Length: 458 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|18406673, gi|....

Description E-value Query
Range
Subject
Range
gi|7486915, gi|3... - pir||T02275 hypothetical protein T13D8.12 - Arabidopsis thaliana, gi|3249072|gb|AAC24056.1| Contain...
424.0 [0..5] [458..1]

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Predicted Domain #1
Region A:
Residues: [1-181]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTTMRRLGI ITLTNSAAVV TPSLLSSTAA FPGTLTLPSP LLSDRLTNSI LFHESRSLSF  60
   61 SCFSSSSSSS AAYLPSLEEY PSAKGSVKRD DNQKVVLKGM TYASLQEWVQ SHGFRPGQAL 120
  121 MLWKRLYKDN IWANNVDELE GLNKDLKRMI SEHAEFGALS FKDIRSASDG TRKILFTLDD 180
  181 G

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [182-458]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LVIETVVIPC DRGRTTVCVS SQVGCAMNCQ FCYTGRMGLK RNLTTAEIVE QAVYARRLLS  60
   61 HEVGSITNVV FMGMGEPFHN IDNVIKAANI MVDENGLHFS PRKVTVSTSG LVPQLKRFLR 120
  121 ESNCALAVSL NATTDEVRNW IMPINRKYKL SLLLETLREG LSSRHKYKVL FEYVMLAGVN 180
  181 DSMDDARRLV ELVQGIPCKI NLIQFNPHSG SQFIQTEEDK MIKFRNVLAE GGCTVLMRFS 240
  241 RGNDQMAACG QLGMIGAVQA PVMRVPEQFR TALKASV

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 33.09691
Match: 1tv7A
Description: Structure of the S-adenosylmethionine dependent Enzyme MoaA
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 1.48331922124015 bayes_pls_golite062009
transferase activity 0.685192555939835 bayes_pls_golite062009
binding 0.131941651473395 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle