Protein: | KN12A_ARATH |
Organism: | Arabidopsis thaliana |
Length: | 1292 amino acids |
Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for KN12A_ARATH.
Description | E-value | Query Range |
Subject Range |
|
327.0 | [0..3] | [1292..2] |
|
321.0 | [0..169] | [1292..1764] |
|
318.0 | [0..86] | [444..2] |
|
314.0 | [0..91] | [827..11] |
|
313.0 | [0..82] | [460..5] |
|
308.0 | [0..86] | [1037..3] |
|
306.0 | [0..82] | [461..5] |
Region A: Residues: [1-88] |
1 11 21 31 41 51 | | | | | | 1 MKKHFTLPRN AILRDGGEPH SPNPSISKSK PPRKLRSAKE NAPPLDRNTS TPDHRSMRMK 60 61 NPLPPRPPPS NPLKRKLSAE TATESGFS |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
Region A: Residues: [89-520] |
1 11 21 31 41 51 | | | | | | 1 DSGVKVIVRM KPLNKGEEGD MIVEKMSKDS LTVSGQTFTF DSIANPESTQ EQMFQLVGAP 60 61 LVENCLSGFN SSVFAYGQTG SGKTYTMWGP ANGLLEEHLC GDQRGLTPRV FERLFARIKE 120 121 EQVKHAERQL NYQCRCSLLE IYNEQITDLL DPSQKNLMIR EDVKSGVYVE NLTEEYVKNL 180 181 TDVSQLLIKG LGNRRTGATS VNTESSRSHC VFTCVVESRC KNVADGLSSF KTSRINLVDL 240 241 AGSERQKSTG AAGERLKEAG NINRSLSQLG NLINILAEIS QTGKPRHIPY RDSRLTFLLQ 300 301 ESLGGNAKLA MVCAVSPSQS CRSETFSTLR FAQRAKAIQN KAVVNEVMQD DVNFLRGVIH 360 361 QLRDELQRMK NDGNNPTNPN VAYSTAWNAR RSLNLLRSFG LGHPRSLPHE DNDGDIEMEI 420 421 DEAAVERLCV QV |
Detection Method: | |
Confidence: | 86.30103 |
Match: | 1gojA |
Description: | Kinesin |
Matching Structure (courtesy of the PDB): |
Region A: Residues: [521-696] |
1 11 21 31 41 51 | | | | | | 1 GLQSSLASEG INHDMNRVKS IHSSDGQSIE KRLPEDSDVA MEDACCHTEN HEPETVDNMR 60 61 TETETGIREN QIKTHSQTLD HESSFQPLSV KDALCSSLNK SEDVSSCPDL VPQDVTSANV 120 121 LIADGVDDPE HLVNSASPSL CIDPVGATPV LKSPTLSVSP TIRNSRKSLK TSELST |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
Region A: Residues: [697-795] |
1 11 21 31 41 51 | | | | | | 1 ASQKDSEGEN LVTEAADPSP ATSKKMNNCS SALSTQKSKV FPVRTERLAS SLHKGIKLLE 60 61 SYCQSTAQRR STYRFSFKAP DSEPSTSISK ADAGVQTIP |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
MCM Score |
SCOP Match |
SCOP Description | ||
View | Download | 0.392 | a.5.3 | N-terminal domain of phosphatidylinositol transfer protein sec14p |
View | Download | 0.330 | a.29.8 | Description not found. |
View | Download | 0.279 | a.8.3 | Families 57/38 glycoside transferase middle domain |
View | Download | 0.278 | a.23.4 | Mitochondrial import receptor subunit Tom20 |
View | Download | 0.278 | a.23.4 | Mitochondrial import receptor subunit Tom20 |
View | Download | 0.252 | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
View | Download | 0.252 | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
View | Download | 0.231 | a.2.7 | tRNA-binding arm |
View | Download | 0.227 | a.64.1 | Saposin |
Region A: Residues: [796-921] |
1 11 21 31 41 51 | | | | | | 1 GADAISEENT KEFLCCKCKC REQFDAQQMG DMPNLQLVPV DNSEVAEKSK NQVPKAVEKV 60 61 LAGSIRREMA LEEFCTKQAS EITQLNRLVQ QYKHERECNA IIGQTREDKI IRLESLMDGV 120 121 LSKEDF |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
MCM Score |
SCOP Match |
SCOP Description | ||
View | Download | 0.902 | a.24.9 | alpha-catenin/vinculin |
View | Download | 0.860 | f.36.1 | Neurotransmitter-gated ion-channel pransmembrane pore |
View | Download | 0.860 | f.36.1 | Neurotransmitter-gated ion-channel pransmembrane pore |
View | Download | 0.822 | a.24.3 | Cytochromes |
View | Download | 0.822 | a.24.3 | Cytochromes |
View | Download | 0.821 | a.24.3 | Cytochromes |
View | Download | 0.821 | a.24.3 | Cytochromes |
View | Download | 0.809 | a.24.9 | alpha-catenin/vinculin |
View | Download | 0.734 | f.36.1 | Neurotransmitter-gated ion-channel pransmembrane pore |
View | Download | 0.666 | a.7.8 | GAT domain |
Region A: Residues: [922-1292] |
1 11 21 31 41 51 | | | | | | 1 LDEEFASLLH EHKLLKDMYQ NHPEVLKTKI ELERTQEEVE NFKNFYGDMG EREVLLEEIQ 60 61 DLKLQLQCYI DPSLKSALKT CTLLKLSYQA PPVNAIPESQ DESLEKTLEQ ERLCWTEAET 120 121 KWISLSEELR TELEASKALI NKQKHELEIE KRCGEELKEA MQMAMEGHAR MLEQYADLEE 180 181 KHMQLLARHR RIQDGIDDVK KAAARAGVRG AESRFINALA AEISALKVEK EKERQYLRDE 240 241 NKSLQTQLRD TAEAIQAAGE LLVRLKEAEE GLTVAQKRAM DAEYEAAEAY RQIDKLKKKH 300 301 ENEINTLNQL VPQSHIHNEC STKCDQAVEP SVNASSEQQW RDEFEPLYKK ETEFSNLAEP 360 361 SWFSGYDRCN I |
Detection Method: | |
Confidence: | 9.522879 |
Match: | 1i84S |
Description: | Heavy meromyosin subfragment |
Matching Structure (courtesy of the PDB): |