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View Structure Prediction Details

Protein: PROD2_ARATH
Organism: Arabidopsis thaliana
Length: 476 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PROD2_ARATH.

Description E-value Query
Range
Subject
Range
gi|37525880, gi|... - gi|37525880|ref|NP_929224.1| trifunctional transcriptional regulator/proline dehydrogenase/pyrroline...
466.0 [0..14] [469..167]

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Predicted Domain #1
Region A:
Residues: [1-476]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MANRFLRPNL IHRFSTVSPV GPPTTIIPEI LSFDQPKPEV DLDLSDQARL FASVPISTLL  60
   61 RSTAILHATS IGPMVDLGSW LMSSKLMDTT VTRDLVLRIV KGTFYDHFCA GEDAAAAARR 120
  121 VSSVYESTGL KGMLVYGVEH AEDGGACDEN IQKFIETVEA AKTLPSSHLS SVVVKITAIC 180
  181 PMNVLKRVSD LLRWQYKNPN FKLPWKLNSF PVFSGLSPLY HTTSEPEPLT VEEERELEKA 240
  241 HERLKSVCLR CQESNVPLLI DAEDTILQPA IDYMAYWSAI MFNSDKDRPI VYNTIQAYLK 300
  301 DAGERLHLAL RESEKMNVPI GFKLVRGAYM SSEAKLADSL GYKSPVHDTI QNTHDCYNDC 360
  361 MSFLMEKASN GSGIAVILAT HNTDSGKLGA RKASELGINK ENGKIEFAQL YGMSDALSFG 420
  421 LKRAGFNVSK YMPYGPVDTA IPYLIRRAYE NRGMMSTGAL DRQLMRKELK RRVMAW

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 125.0
Match: 1k87A
Description: N-terminal domain of bifunctional PutA protein; Proline dehydrohenase domain of bifunctional PutA protein
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
oxidoreductase activity, acting on the CH-NH group of donors 6.88732579226533 bayes_pls_golite062009
1-pyrroline-5-carboxylate dehydrogenase activity 6.68550231605226 bayes_pls_golite062009
oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor 5.85251457886657 bayes_pls_golite062009
oxidoreductase activity 3.26500423104107 bayes_pls_golite062009
catalytic activity 2.15527229494088 bayes_pls_golite062009
methylenetetrahydrofolate reductase (NADPH) activity 1.53575450131902 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle