YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|49258913, gi\|...
Organism:	Escherichia coli
Length:	107 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|49258913, gi|....

Description	E-value	Query Range	Subject Range
gi\|126208405, gi... - gi\|126208405\|ref\|YP_001053630.1\| iron-binding protein IscA [Actinobacillus pleuropneumoniae L20], gi... gi\|190150256, gi... - gi\|190150256\|ref\|YP_001968781.1\| iron-binding protein IscA [Actinobacillus pleuropneumoniae serovar ... gi\|165976348, gi... - gi\|165976348\|ref\|YP_001651941.1\| iron-binding protein [Actinobacillus pleuropneumoniae serovar 3 str... gi\|32034039 - gi\|32034039\|ref\|ZP_00134283.1\| COG0316: Uncharacterized conserved protein [Actinobacillus pleuropneu...	162.0	[0..1]	[107..1]
gi\|41725506, gi\|... - gi\|71907581\|ref\|YP_285168.1\| HesB/YadR/YfhF:Iron-sulphur cluster assembly protein IscA [Dechloromona...	160.0	[0..1]	[107..1]
gi\|167739343 - gi\|167739343\|ref\|ZP_02412117.1\| HesB family protein [Burkholderia pseudomallei 14] gi\|53719897, gi\|... - gi\|53719897\|ref\|YP_108883.1\| HesB family protein [Burkholderia pseudomallei K96243], gi\|52210311\|emb... gi\|167816558 - gi\|167816558\|ref\|ZP_02448238.1\| HesB family protein [Burkholderia pseudomallei 91]	160.0	[0..1]	[107..1]
gi\|33148430, gi\|... - gi\|33152208\|ref\|NP_873561.1\| hesB family protein [Haemophilus ducreyi 35000HP], gi\|33148430\|gb\|AAP95...	160.0	[0..1]	[107..1]
gi\|37197683, gi\|... - gi\|37678941\|ref\|NP_933550.1\| hypothetical protein VV0757 [Vibrio vulnificus YJ016], gi\|37197683\|dbj\|...	160.0	[0..1]	[107..1]
gi\|116268803, gi... - gi\|145589672\|ref\|YP_001156269.1\| iron-sulfur cluster assembly protein IscA [Polynucleobacter necessa...	159.0	[0..1]	[107..1]
gi\|124292415, gi... - gi\|124384395\|ref\|YP_001029046.1\| iron-sulfur cluster assembly protein IscA [Burkholderia mallei NCTC... gi\|121600391, gi... - gi\|121600391\|ref\|YP_993527.1\| iron-sulfur cluster assembly protein IscA [Burkholderia mallei SAVP1],... gi\|76579932, gi\|... - gi\|76810479\|ref\|YP_334117.1\| iron-sulfur cluster assembly protein IscA [Burkholderia pseudomallei 17... gi\|126448283, gi... - gi\|126448283\|ref\|YP_001081034.1\| iron-sulfur cluster assembly protein IscA [Burkholderia mallei NCTC... gi\|217420992, gi... - gi\|217420992\|ref\|ZP_03452497.1\| iron-sulfur cluster assembly protein IscA [Burkholderia pseudomallei... gi\|126221066, gi... - gi\|126441573\|ref\|YP_001059623.1\| iron-sulfur cluster assembly protein IscA [Burkholderia pseudomalle... gi\|157806842, gi... - gi\|254297032\|ref\|ZP_04964485.1\| iron-sulfur cluster assembly protein IscA [Burkholderia pseudomallei... gi\|254195801, gi... - gi\|254195801\|ref\|ZP_04902227.1\| iron-sulfur cluster assembly protein IscA [Burkholderia pseudomallei... gi\|255662935, gi... - gi\|83719700\|ref\|YP_442407.1\| iron-sulfur cluster assembly protein IscA [Burkholderia thailandensis E... gi\|157939074, gi... - gi\|254191402\|ref\|ZP_04897906.1\| iron-sulfur cluster assembly protein IscA [Burkholderia pseudomallei... gi\|126226127, gi... - gi\|126452485\|ref\|YP_001066906.1\| iron-sulfur cluster assembly protein IscA [Burkholderia pseudomalle... gi\|184214899, gi... - gi\|254184368\|ref\|ZP_04890958.1\| iron-sulfur cluster assembly protein IscA [Burkholderia pseudomallei... gi\|194313188, gi... - gi\|254177525\|ref\|ZP_04884180.1\| iron-sulfur cluster assembly protein IscA [Burkholderia mallei ATCC ... gi\|194574844, gi... - gi\|254357969\|ref\|ZP_04974242.1\| iron-sulfur cluster assembly protein IscA [Burkholderia mallei 20027... gi\|167919684 - gi\|167919684\|ref\|ZP_02506775.1\| iron-sulfur cluster assembly protein IscA [Burkholderia pseudomallei... gi\|254209360, gi... - gi\|254209360\|ref\|ZP_04915706.1\| iron-sulfur cluster assembly protein IscA [Burkholderia mallei JHU],... gi\|167911684 - gi\|167911684\|ref\|ZP_02498775.1\| iron-sulfur cluster assembly protein IscA [Burkholderia pseudomallei... gi\|167903436 - gi\|167903436\|ref\|ZP_02490641.1\| iron-sulfur cluster assembly protein IscA [Burkholderia pseudomallei... gi\|167895049 - gi\|167895049\|ref\|ZP_02482451.1\| iron-sulfur cluster assembly protein IscA [Burkholderia pseudomallei... gi\|167846471 - gi\|167846471\|ref\|ZP_02471979.1\| iron-sulfur cluster assembly protein IscA [Burkholderia pseudomallei... gi\|167824953 - gi\|167824953\|ref\|ZP_02456424.1\| iron-sulfur cluster assembly protein IscA [Burkholderia pseudomallei... gi\|167720351 - gi\|167720351\|ref\|ZP_02403587.1\| iron-sulfur cluster assembly protein IscA [Burkholderia pseudomallei... gi\|167581328 - gi\|167581328\|ref\|ZP_02374202.1\| iron-sulfur cluster assembly protein IscA [Burkholderia thailandensi... gi\|167000651, gi... - gi\|243063459\|gb\|EES45645.1\| iron-sulfur cluster assembly protein IscA [Burkholderia mallei PRL-20], ... gi\|242317210, gi... - gi\|242317210\|ref\|ZP_04816226.1\| iron-sulfur cluster assembly protein IscA [Burkholderia pseudomallei... gi\|238524235, gi... - gi\|238561627\|ref\|ZP_00441748.2\| iron-sulfur cluster assembly protein IscA [Burkholderia mallei GB8 h... gi\|237813017, gi... - gi\|237813017\|ref\|YP_002897468.1\| iron-sulfur cluster assembly protein IscA [Burkholderia pseudomalle... gi\|226195463, gi... - gi\|226195463\|ref\|ZP_03791051.1\| iron-sulfur cluster assembly protein IscA [Burkholderia pseudomallei... gi\|254259198, gi... - gi\|254259198\|ref\|ZP_04950252.1\| iron-sulfur cluster assembly protein IscA [Burkholderia pseudomallei... gi\|254200284, gi... - gi\|254200284\|ref\|ZP_04906650.1\| iron-sulfur cluster assembly protein IscA [Burkholderia mallei FMH],... gi\|134277980, gi... - gi\|134277980\|ref\|ZP_01764695.1\| iron-sulfur cluster assembly protein IscA [Burkholderia pseudomallei... gi\|53723801, gi\|... - gi\|53723801\|ref\|YP_103326.1\| iron-sulfur cluster assembly accessory protein [Burkholderia mallei ATC...	159.0	[0..1]	[107..1]
gi\|86145585, gi\|... - gi\|86145585\|ref\|ZP_01063915.1\| HesB family protein [Vibrio sp. MED222], gi\|85836556\|gb\|EAQ54682.1\| H... gi\|218321650, gi... - gi\|218708631\|ref\|YP_002416252.1\| HesB family protein [Vibrio splendidus LGP32], gi\|218321650\|emb\|CAV... gi\|84377461, gi\|... - gi\|84387616\|ref\|ZP_00990633.1\| HesB family protein [Vibrio splendidus 12B01], gi\|84377461\|gb\|EAP9432...	159.0	[0..1]	[107..1]
gi\|120611116, gi... - gi\|120611116\|ref\|YP_970794.1\| iron-sulfur cluster assembly protein IscA [Acidovorax avenae subsp. ci...	159.0	[0..1]	[107..1]
gi\|84362279 - gi\|84362279\|ref\|ZP_00986910.1\| COG0316: Uncharacterized conserved protein [Burkholderia dolosa AUO15... gi\|134296305, gi... - gi\|67545526\|ref\|ZP_00423447.1\| HesB/YadR/YfhF:Iron-sulphur cluster assembly protein IscA [Burkholder...	159.0	[0..1]	[107..1]

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Predicted Domain #1

Region A:
Residues: [1-107]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSITLSDSAA ARVNTFLANR GKGFGLRLGV RTSGCSGMAY VLEFVDEPTP EDIVFEDKGV  60
   61 KVVVDGKSMQ FLDGTQLDFV KEGLNEGFKF TNPNVKDECG CGESFHV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	38.0
Match:	1s98A
Description:	E.coli IscA crystal structure to 2.3 A
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
2 iron, 2 sulfur cluster binding	1.80248983815833	bayes_pls_golite062009
iron-sulfur cluster binding	1.47577968990921	bayes_pls_golite062009
metal cluster binding	1.47577968990921	bayes_pls_golite062009
binding	0.0602586837339399	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: