Protein: | gi|220944472, gi... |
Organism: | synthetic construct |
Length: | 264 amino acids |
Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|220944472, gi....
Description | E-value | Query Range |
Subject Range |
|
471.0 | [0..1] | [260..1] |
|
468.0 | [0..1] | [260..1] |
|
396.0 | [0..1] | [252..1] |
|
396.0 | [0..1] | [231..1] |
|
394.0 | [0..1] | [245..1] |
|
393.0 | [0..1] | [217..1] |
|
392.0 | [0..1] | [217..1] |
|
389.0 | [0..1] | [239..1] |
|
389.0 | [0..1] | [224..1] |
Region A: Residues: [1-139] |
1 11 21 31 41 51 | | | | | | 1 MDFQNRAGGK TGSGGVASWS ETNRDRKERL RQLALETIDL NKDPYFMKNH LGSYECKLCL 60 61 TLHNNEGSYL AHTQGKKHQD NLARRAAKEA KEAPSSLLAP EKPRVEPKKF VKIGRPGYRV 120 121 TKQRELSNGQ QSLLFQVDY |
Detection Method: | |
Confidence: | 2.1 |
Match: | 1zr9A |
Description: | Solution Structure of a Human C2H2-type Zinc Finger Protein |
Matching Structure (courtesy of the PDB): |
Term | Confidence | Notes |
transcription regulator activity | 3.37529385176635 | bayes_pls_golite062009 |
DNA binding | 3.3049326844117 | bayes_pls_golite062009 |
nucleic acid binding | 3.24981360535232 | bayes_pls_golite062009 |
snRNA binding | 3.16782731106334 | bayes_pls_golite062009 |
RNA binding | 3.11293528368816 | bayes_pls_golite062009 |
U1 snRNA binding | 2.86343975521155 | bayes_pls_golite062009 |
binding | 2.84954567129719 | bayes_pls_golite062009 |
transcription factor activity | 2.44389510173662 | bayes_pls_golite062009 |
RNA polymerase II transcription factor activity | 1.57041104288348 | bayes_pls_golite062009 |
mRNA binding | 1.28525296322454 | bayes_pls_golite062009 |
transcription activator activity | 1.20323819132961 | bayes_pls_golite062009 |
protein binding | 0.975412203442928 | bayes_pls_golite062009 |
sequence-specific DNA binding | 0.732558534458316 | bayes_pls_golite062009 |
transcription repressor activity | 0.686318575498149 | bayes_pls_golite062009 |
chromatin binding | 0.626365497850853 | bayes_pls_golite062009 |
transcription factor binding | 0.515821187939278 | bayes_pls_golite062009 |
cytoskeletal protein binding | 0.380243728411498 | bayes_pls_golite062009 |
catalytic activity | 0.263007611601737 | bayes_pls_golite062009 |
specific RNA polymerase II transcription factor activity | 0.200483461579207 | bayes_pls_golite062009 |
tubulin binding | 0.151955152284472 | bayes_pls_golite062009 |
transcription cofactor activity | 0.113925660147477 | bayes_pls_golite062009 |
structure-specific DNA binding | 0.0855506955761403 | bayes_pls_golite062009 |
microtubule binding | 0.05082413668213 | bayes_pls_golite062009 |
Region A: Residues: [140-264] |
1 11 21 31 41 51 | | | | | | 1 PEITESIVPR HRFMSAYEQK IEPPDRKWQY LLFAAEPYET IGFKVPSREV EKSEGKFWTH 60 61 WNRDTKQFFL QFAFKFEPKI LPPPPPNLHR ALGPPGGFPM PGPPRPAMHP MFNGVHPPPP 120 121 MLSNN |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.