YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|220954314, gi...
Organism:	synthetic construct
Length:	182 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|220954314, gi....

Description	E-value	Query Range	Subject Range
gi\|50746002 - gi\|50746002\|ref\|XP_420334.1\| PREDICTED: similar to malignant T cell amplified sequence 1; MCT-1 prot...	218.0	[0..1]	[182..139]
gi\|73949188 - gi\|73949188\|ref\|XP_544278.2\| PREDICTED: similar to malignant T cell amplified sequence 1 [Canis fami...	217.0	[0..1]	[182..158]
gi\|108876300, gi... - gi\|157116754\|ref\|XP_001658619.1\| mct-1 protein [Aedes aegypti], gi\|108876300\|gb\|EAT40525.1\| mct-1 pr...	215.0	[0..1]	[182..1]
gi\|58385837, gi\|... - gi\|58385837\|ref\|XP_314243.2\| ENSANGP00000014512 [Anopheles gambiae str. PEST], gi\|55240371\|gb\|EAA096...	214.0	[0..1]	[182..1]
gi\|91081671 - gi\|91081671\|ref\|XP_969903.1\| PREDICTED: similar to mct-1 protein [Tribolium castaneum]	214.0	[0..1]	[182..1]
MCS1A_XENLA - Malignant T-cell-amplified sequence 1-A OS=Xenopus laevis GN=mcts1-a PE=2 SV=1	210.0	[0..1]	[182..1]
gi\|55742194 - ref\|NP_001006880.1\| malignant T cell amplified sequence 1 [Xenopus tropicalis] MCTS1_XENTR - Malignant T-cell-amplified sequence 1 OS=Xenopus tropicalis GN=mcts1 PE=2 SV=1	209.0	[0..1]	[182..1]
ENSCJAT00000004957 - null MCTS1_BOVIN - Malignant T-cell-amplified sequence 1 OS=Bos taurus GN=MCTS1 PE=2 SV=1 gi\|74008257 - gi\|74008257\|ref\|XP_864674.1\| PREDICTED: similar to malignant T cell amplified sequence 1 isoform 3 [... gi\|114690028 - gi\|114690028\|ref\|XP_001137540.1\| PREDICTED: malignant T cell amplified sequence 1 isoform 3 [Pan tro... MCTS1 - malignant T cell amplified sequence 1	209.0	[0..1]	[182..1]
gi\|110750888 - gi\|110750888\|ref\|XP_001120413.1\| PREDICTED: similar to CG5941-PA [Apis mellifera]	209.0	[0..1]	[182..1]
gi\|149060052 - gi\|149060052\|gb\|EDM10868.1\| malignant T cell amplified sequence 1, isoform CRA_a [Rattus norvegicus] MCTS1_MOUSE - Malignant T-cell-amplified sequence 1 OS=Mus musculus GN=Mcts1 PE=1 SV=1	208.0	[0..1]	[182..1]

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Predicted Domain #1

Region A:
Residues: [1-182]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFKKFEEKDS ISSIQQLKSS VQKGIRAKLL EAYPKLESHI DLILPKKDSY RIAKCHDHIE  60
   61 LLLNGAGDQV FFRHRDGPWM PTLRLLHKFP YFVTMQQVDK GAIRFVLSGA NVMCPGLTSP 120
  121 GACMTPADKD TVVAIMAEGK EHALAVGLLT LSTQEILAKN KGIGIETYHF LNDGLWKSKP 180
  181 VK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	36.09691
Match:	2apoA
Description:	Crystal Structure of the Methanococcus jannaschii Cbf5 Nop10 Complex
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
protein binding	1.42723828072353	bayes_pls_golite062009
binding	1.32705610464746	bayes_pls_golite062009
nucleic acid binding	0.494497910595989	bayes_pls_golite062009
transcription regulator activity	0.280679512188409	bayes_pls_golite062009
DNA binding	0.161277478498683	bayes_pls_golite062009
catalytic activity	0.147263815852997	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: