YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|194128412, gi...
Organism:	Drosophila sechellia
Length:	194 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|194128412, gi....

Description	E-value	Query Range	Subject Range
gi\|109506458, gi... - gi\|109507163\|ref\|XP_001064260.1\| PREDICTED: similar to zinc finger, matrin type 2 [Rattus norvegicus...	198.0	[0..7]	[193..128]
gi\|39969771, gi\|... - gi\|39969771\|ref\|XP_366276.1\| hypothetical protein MG10495.4 [Magnaporthe grisea 70-15], gb\|EAA46801....	190.0	[0..2]	[192..20]
gi\|54641806\|gb\|E... - GA11083-PA [Drosophila pseudoobscura], GA11083 [Drosophila pseudoobscura pseudoobscura] gi\|54641806, gi\|... - gi\|54641806\|gb\|EAL30556.1\| GA11083 [Drosophila pseudoobscura pseudoobscura], gi\|125978044\|ref\|XP_001... gi\|195172341, gi... - gi\|195172341\|ref\|XP_002026957.1\| GL12725 [Drosophila persimilis], gi\|194112725\|gb\|EDW34768.1\| GL1272...	186.0	[0..1]	[194..1]
gi\|115803248, gi... - gi\|115803248\|ref\|XP_785671.2\| PREDICTED: hypothetical protein, partial [Strongylocentrotus purpuratu...	183.0	[0..4]	[192..397]
gi\|118787816, gi... - gi\|118787816\|ref\|XP_556948.2\| ENSANGP00000026833 [Anopheles gambiae str. PEST], gi\|116126981\|gb\|EAL4...	177.0	[0..2]	[193..3]
gi\|47086675, gi\|... - gi\|47086675\|ref\|NP_997846.1\| zinc finger, matrin type 2 [Danio rerio], gi\|37595334\|gb\|AAQ94553.1\| z2...	176.0	[0..2]	[192..5]
gi\|55715630, gi\|... - gi\|55715630\|gb\|AAH86293.1\| Zmat2-prov protein [Xenopus laevis], gi\|148231065\|ref\|NP_001088651.1\| zin...	174.0	[0..7]	[192..11]
gi\|50370210, gi\|... - gi\|52346154\|ref\|NP_001005119.1\| zinc finger, matrin type 2 [Xenopus (Silurana) tropicalis], gi\|50370...	173.0	[0..7]	[192..11]

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Predicted Domain #1

Region A:
Residues: [1-194]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTMRPDDHRR KWDKNEYEKL AAERLLNQVA PKEEEPVQRE NLKRRDYKVD LDSKLGKSVV  60
   61 INKNTPTSQS GGYYCNVCDC VVKDSINFLD HINGKKHQRN LGMSMKVERS TVDQVKERFQ 120
  121 QNKKKMEEKQ KDYELERRLR EAKEEEDRYK EHRKEKRKER KRKAEDTDFE SGGMPDDMAA 180
  181 IMGFSGFGGS KKNS

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.72
Match:	1zr9A
Description:	Solution Structure of a Human C2H2-type Zinc Finger Protein
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.304205134456748	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: