YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|194471288, gi...
Organism:	Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188
Length:	179 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|194471288, gi....

Description	E-value	Query Range	Subject Range
RL5_ERWCT - 50S ribosomal protein L5 OS=Erwinia carotovora subsp. atroseptica GN=rplE PE=3 SV=1 RL5_PECAS - 50S ribosomal protein L5 OS=Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672) GN=rplE PE...	6.0E-76	[1..179]	[1..179]
RL5_SODGM - 50S ribosomal protein L5 OS=Sodalis glossinidius (strain morsitans) GN=rplE PE=3 SV=1	1.0E-75	[1..179]	[1..179]
RL5_VIBTL - 50S ribosomal protein L5 OS=Vibrio tasmaniensis (strain LGP32) GN=rplE PE=3 SV=1 gi\|84374798, gi\|... - gi\|84394578\|ref\|ZP_00993282.1\| 50S ribosomal protein L5 [Vibrio splendidus 12B01], gi\|84374798\|gb\|EA... gi\|85833407, gi\|... - gi\|86148817\|ref\|ZP_01067084.1\| 50S ribosomal protein L5 [Vibrio sp. MED222], gi\|85833407\|gb\|EAQ51598...	9.0E-75	[1..179]	[1..179]
RL5_MANSM - 50S ribosomal protein L5 OS=Mannheimia succiniciproducens (strain MBEL55E) GN=rplE PE=3 SV=1	1.0E-74	[1..179]	[1..179]
gi\|153217554, gi... - gi\|153217554\|ref\|ZP_01951235.1\| ribosomal protein L5 [Vibrio cholerae 1587], gi\|124113496\|gb\|EAY3231... gi\|153225193, gi... - gi\|153225193\|ref\|ZP_01954716.1\| ribosomal protein L5 [Vibrio cholerae MAK 757], gi\|124117359\|gb\|EAY3... gi\|229369525, gi... - gi\|229606870\|ref\|YP_002877518.1\| LSU ribosomal protein L5p (L11e) [Vibrio cholerae MJ-1236], gi\|2293... gi\|229335118, gi... - gi\|229527486\|ref\|ZP_04416878.1\| LSU ribosomal protein L5p (L11e) [Vibrio cholerae 12129(1)], gi\|2293... gi\|254292236, gi... - gi\|254292236\|ref\|ZP_04963000.1\| ribosomal protein L5 [Vibrio cholerae AM-19226], gi\|197750430\|ref\|YP... gi\|229524565, gi... - gi\|229524565\|ref\|ZP_04413970.1\| LSU ribosomal protein L5p (L11e) [Vibrio cholerae bv. albensis VL426... gi\|229521650, gi... - gi\|229521650\|ref\|ZP_04411068.1\| LSU ribosomal protein L5p (L11e) [Vibrio cholerae TM 11079-80], gi\|2... gi\|229516837, gi... - gi\|229516837\|ref\|ZP_04406283.1\| LSU ribosomal protein L5p (L11e) [Vibrio cholerae RC9], gi\|229345900... gi\|148873353, gi... - gi\|153831166\|ref\|ZP_01983833.1\| ribosomal protein L5 [Vibrio cholerae 623-39], gi\|148873353\|gb\|EDL71... gi\|229513507, gi... - gi\|229513507\|ref\|ZP_04402971.1\| LSU ribosomal protein L5p (L11e) [Vibrio cholerae TMA 21], gi\|229349... gi\|229507364, gi... - gi\|229507364\|ref\|ZP_04396869.1\| LSU ribosomal protein L5p (L11e) [Vibrio cholerae BX 330286], gi\|229... RL5_VIBCM - 50S ribosomal protein L5 OS=Vibrio cholerae serotype O1 (strain M66-2) GN=rplE PE=3 SV=1 gi\|183013146, gi... - gi\|183179735\|ref\|ZP_02957946.1\| ribosomal protein L5 [Vibrio cholerae MZO-3], gi\|183013146\|gb\|EDT884... RL5_VIBCH - 50S ribosomal protein L5 OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) GN... gi\|254846829, gi... - gi\|75828592\|ref\|ZP_00757967.1\| COG0094: Ribosomal protein L5 [Vibrio cholerae MO10], gi\|254851124\|re... RL5_VIBC3 - 50S ribosomal protein L5 OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Classical Ogawa 395 / O... gi\|121628099, gi... - gi\|75814256\|ref\|ZP_00744872.1\| COG0094: Ribosomal protein L5 [Vibrio cholerae V52], gi\|121730157\|ref... RL5_VIBCH - 50S ribosomal protein L5 OS=Vibrio cholerae GN=rplE PE=3 SV=1	2.0E-74	[1..179]	[1..179]
gi\|91228960, gi\|... - gi\|91228960\|ref\|ZP_01262855.1\| 50S ribosomal protein L5 [Vibrio alginolyticus 12G01], gi\|91187480\|gb...	3.0E-74	[1..179]	[1..179]
RL5_VIBPA - 50S ribosomal protein L5 OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) GN=rplE PE=... gi\|153840285, gi... - gi\|153840285\|ref\|ZP_01992952.1\| 50S ribosomal protein L5 [Vibrio parahaemolyticus AQ3810], gi\|149746... RL5_VIBPA - 50S ribosomal protein L5 OS=Vibrio parahaemolyticus GN=rplE PE=3 SV=1	4.0E-74	[1..179]	[1..179]
RL5_PASMU - 50S ribosomal protein L5 OS=Pasteurella multocida (strain Pm70) GN=rplE PE=3 SV=1 RL5_PASMU - 50S ribosomal protein L5 OS=Pasteurella multocida GN=rplE PE=3 SV=1	7.0E-74	[1..179]	[1..179]
RL5_ACTSZ - 50S ribosomal protein L5 OS=Actinobacillus succinogenes (strain ATCC 55618 / 130Z) GN=rplE PE=3 SV=1	7.0E-74	[1..179]	[1..179]
RL5_HAES1 - 50S ribosomal protein L5 OS=Haemophilus somnus (strain 129Pt) GN=rplE PE=3 SV=1 RL5_HISS2 - 50S ribosomal protein L5 OS=Histophilus somni (strain 2336) GN=rplE PE=3 SV=1	8.0E-74	[1..179]	[1..179]

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Predicted Domain #1

Region A:
Residues: [1-179]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKLHDYYKD EVVNKLMTEF NYNSVMQVPR VEKITLNMGV GEAIADKKLL DNAAADLTAI  60
   61 SGQKPLITKA RKSVAGFKIR QGYPIGCKVT LRGERMWEFF ERLITIAVPR IRDFRGLSAK 120
  121 SFDGRGNYSM GVREQIIFPE IDYDKVDRVR GLDITITTTA KSDEEGRALL AAFDFPFRK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	70.39794
Match:	1vs6F
Description:	No description for 1vs6F was found.

Predicted functions:

Term	Confidence	Notes
structural constituent of ribosome	10.0077098174023	bayes_pls_golite062009
structural molecule activity	9.43117206427219	bayes_pls_golite062009
binding	1.22985833191636	bayes_pls_golite062009
protein binding	0.551360246680731	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: