YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: gi|190409135
Organism: Saccharomyces cerevisiae RM11-1a
Length: 129 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|190409135.

Description E-value Query
Range
Subject
Range
gi|190409135 - gi|190409135|gb|EDV12400.1| hypothetical protein SCRG_03283 [Saccharomyces cerevisiae RM11-1a]
PGA2_YEAST - Processing of GAS1 and ALP protein 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PGA...
gi|151944388 - gi|151944388|gb|EDN62666.1| processing of gas1p and alp [Saccharomyces cerevisiae YJM789]
PGA2 - Essential protein required for maturation of Gas1p and Pho8p; involved in protein trafficking; GFP-f...
3.0E-46 [1..129] [1..129]
PGA2_SCHPO - PGA2-homolog C27.01c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC27.01c PE=1 SV=1
SPBC27.01c - secretory pathway protein Pga2
4.0E-29 [16..129] [9..132]
gi|1236274 - gi|1236274|dbj|BAA12198.1| unnamed protein product [Schizosaccharomyces pombe]
1.0E-26 [16..117] [9..115]
gi|85102566 - gi|85102566|ref|XP_961357.1| hypothetical protein NCU03630 [Neurospora crassa OR74A]
gi|32404638, gi|... - gi|32404638|ref|XP_322932.1| hypothetical protein [Neurospora crassa], gi|28922901|gb|EAA32121.1| pr...
0.001 [18..95] [25..117]

Back

Predicted Domain #1
Region A:
Residues: [1-129]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEVAETWVD TWMAKLVNYD YKHFIRLVII VGGYLLLRNI ASRELAKKQL AAQVEKDKRD  60
   61 KEEKRSKDLI DKPDDAATAE TTSFGWGKKT RRRVKRQQEL FENALEEAKR RNQGLDPDSD 120
  121 ADIEELLEE

[Run NCBI BLAST on this sequence.]

Detection Method: Pcons
Confidence: 1.55
Match: 1jgsA
Description: Multiple antibiotic resistance repressor, MarR
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 2.92638462203672 bayes_pls_golite062009
transcription regulator activity 2.22253996678636 bayes_pls_golite062009
nucleic acid binding 2.14288680048889 bayes_pls_golite062009
DNA binding 2.10600827813244 bayes_pls_golite062009
transcription factor activity 1.32901697252559 bayes_pls_golite062009
protein binding 1.2080702238979 bayes_pls_golite062009
RNA polymerase II transcription factor activity 0.436849299068334 bayes_pls_golite062009
structural molecule activity 0.241691756012358 bayes_pls_golite062009
sequence-specific DNA binding 0.215472749582216 bayes_pls_golite062009
structural constituent of ribosome 0.145583411541476 bayes_pls_golite062009
transcription activator activity 0.0101820413115041 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle